Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_G20
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024807-2|AAF59528.2| 431|Caenorhabditis elegans Hypothetical ... 35 0.068
U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical pr... 33 0.21
L16685-2|AAY43982.1| 262|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical p... 30 1.5
U80837-2|AAB37902.1| 315|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical p... 28 5.9
Z73425-1|CAA97784.1| 97|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical ... 28 5.9
U20864-12|AAK68358.2| 257|Caenorhabditis elegans Hypothetical p... 28 7.9
>AC024807-2|AAF59528.2| 431|Caenorhabditis elegans Hypothetical
protein Y53G8AL.2 protein.
Length = 431
Score = 34.7 bits (76), Expect = 0.068
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Frame = +3
Query: 36 VVIFGSTGVIGLNAVEAALKKGLE-VRAFVRDPAKLPEH--LKDKVEIV--KGNVLEPDS 200
V +FG++G +GL V K G + + + +DP + EH L + +++ +++ +S
Sbjct: 62 VTVFGASGFLGLPVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEES 121
Query: 201 VHEAVEGTDAVVITLGTR 254
+ +AV+ ++ V+ +GTR
Sbjct: 122 IRKAVKYSNVVINLIGTR 139
>U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical
protein K09E2.1 protein.
Length = 915
Score = 33.1 bits (72), Expect = 0.21
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -1
Query: 250 VPRVMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLS--AAST 77
VP T+ +VPST T S SRT + +T S + A T R P L +A T
Sbjct: 582 VPSTTTSVTVPSTQKATPSPSRTTKKSTTTTSTTATPRQA---TPTRNPLPLLQTMSAIT 638
Query: 76 AFKPITPVEPKIT 38
AF + +E +T
Sbjct: 639 AFPTLLSMEKAVT 651
>L16685-2|AAY43982.1| 262|Caenorhabditis elegans Hypothetical
protein ZC21.9 protein.
Length = 262
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 574 RNVPRSHLAMVLPGVFSGFTSIIISRLGSSV-KCGGNA 464
R+ +HLA V+PGVF+ ++ I++L SS C N+
Sbjct: 13 RDQRHAHLAQVVPGVFTSLVALSIAQLTSSCPSCNTNS 50
>Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical
protein F49A5.7 protein.
Length = 411
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -1
Query: 235 TTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLSAASTAFKPIT 59
+T ++P T T S + L ++ + S + +RT +R+ +P S AST +P+T
Sbjct: 80 STTNIPMTTFSTNEASSSTKLLSTSSTAEISST---TRTVSRSIKPETSTASTTIRPLT 135
>U80837-2|AAB37902.1| 315|Caenorhabditis elegans Hypothetical
protein F07E5.2 protein.
Length = 315
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -3
Query: 299 VFGSFR*IRSRRQVVPSPEGDDDSVCSFDGLMYRVWFENISFDYLDLVFKM 147
+F I R ++V E ++ + FDG VWF F +L++ M
Sbjct: 256 IFKGINYIEKRNRIVQCQEREEYRIERFDGTEALVWFNPNRFPFLEMTVMM 306
>Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 247 PRVMTTASVPSTASCTESGSRTFPLTISTLSLR 149
P+ TT ++PST + TES S + + +T +R
Sbjct: 132 PQTTTTTTIPSTTTMTESSSTSTTASPTTTRIR 164
>Z73425-1|CAA97784.1| 97|Caenorhabditis elegans Hypothetical
protein F12F6.2 protein.
Length = 97
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 232 TASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLS 89
T S+PS SCT + R + + + C SF+ + ++ RPFLS
Sbjct: 45 TLSIPSV-SCTAAIDRKKEMMMKETMVVCVRSFSDALETSQRLRPFLS 91
>AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 247 PRVMTTASVPSTASCTESGSRTFPLTISTLSLR 149
P+ TT ++PST + TES S + + +T +R
Sbjct: 132 PQTTTTTTIPSTTTMTESSSTSTTASPTTTRIR 164
>U20864-12|AAK68358.2| 257|Caenorhabditis elegans Hypothetical
protein F32A5.8 protein.
Length = 257
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 15 VKLKMKKVVIFGSTGVIGLNAVEAALKKGLEVRAFVRDPAKLPEHLKDKVEIVKGNV 185
+ L K I G+T IG+ A KG V F R+ + E LK ++E K +V
Sbjct: 32 IDLSGKTYAITGTTSGIGIETARALALKGAHVVMFNRNIVE-SEKLKKRIEEEKPDV 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,236
Number of Sequences: 27780
Number of extensions: 355114
Number of successful extensions: 1084
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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