Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_G17
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       29   0.035
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.33 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 0.035
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +1

Query: 385 DGFEDNIETIDSAEDAKNSQQDNARKTEDKDSDETVFDVLEPDSKEEPKLPPPIVEDEKK 564
           DG +DN +  D+    ++++ D  +KT     D    D  E    +E  +PP +  DEK 
Sbjct: 109 DG-DDNNDYEDNDYGNQDNRNDRRKKTFAAREDN---DEEEAQKPKEQYIPPELPNDEKS 164

Query: 565 IFLEAQEI 588
           +F    EI
Sbjct: 165 LFENGVEI 172


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 337 DNRDPDQENKEEIDSDDGFEDNIETIDSAEDAKNSQQDNARKTEDKDSDE 486
           D+RD D+EN+EE D   G  +  + +   EDA  +     R+ +D+ S E
Sbjct: 278 DDRDDDEENEEEEDG-RGQSEAEKRLKLDEDADGAVSP-LRREKDRGSRE 325


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 169 QLSLQSHFLRPLKFHKI 119
           Q +L S+F+ P+ FH I
Sbjct: 448 QGALLSYFIEPIYFHSI 464


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 340 NRDPDQENKEEIDSDDGFEDN 402
           N+D ++ N+ EI+SD+  E N
Sbjct: 69  NQDTEKLNQLEIESDNSKEVN 89


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -3

Query: 424 QQNQWFQCYLQNHHRCQF 371
           ++N WF  + ++H +C++
Sbjct: 421 RRNPWFVEFWEHHFQCRY 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.132    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,611
Number of Sequences: 438
Number of extensions: 2070
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)