Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_G15
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.3  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 635 AVVETYC*VNYVFHDLAHHY 576
           AV +T C  NYV  D  H Y
Sbjct: 529 AVKDTXCDPNYVVPDSEHGY 548


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 46  IIQYICRLLYSNYFNQTVYCK 108
           I+  +  + Y N F QT+ CK
Sbjct: 326 ILYNLMSIKYRNAFKQTICCK 346


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 362 QPPP*FGLSNKSA*ENLLLGKHTRAPS 282
           QPPP FG+S  S      L    R+P+
Sbjct: 379 QPPPNFGVSQVSPVSMSALVSAVRSPA 405


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 57  YLSSTVFKLFQSNSLL*RVK 116
           +LSS  F++FQS   +  +K
Sbjct: 307 FLSSLAFRVFQSTQYIRHIK 326


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 202 TSPKTRRIAKQCSRHFTMICSVTVNP 125
           TSP T   +     H    CSVT +P
Sbjct: 330 TSPMTSTKSTIVRNHLNSTCSVTNSP 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,489
Number of Sequences: 438
Number of extensions: 3741
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)