Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_G12
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 201 4e-52
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 201 4e-52
07_03_1639 + 28305801-28305958,28306240-28306249 33 0.21
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 31 0.64
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 31 0.64
03_02_0050 + 5272471-5274861 30 1.5
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 3.4
04_04_1687 - 35365766-35366356,35367137-35368135 29 4.5
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 4.5
04_03_0266 + 13648287-13649099,13649186-13649524 28 6.0
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 7.9
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 28 7.9
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 201 bits (491), Expect = 4e-52
Identities = 90/145 (62%), Positives = 109/145 (75%)
Frame = +3
Query: 93 VMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 272
V++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+ EA++KG
Sbjct: 14 VLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKG 73
Query: 273 RHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFK 452
RH G+GKRRGT AR+P K LW AKKID+H+YH +YMK KGN+FK
Sbjct: 74 RHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFK 133
Query: 453 NKRVLMEYIHRKKAEKARTKMLSDQ 527
NKRVLME IH+ KAEKAR K LSDQ
Sbjct: 134 NKRVLMESIHKSKAEKAREKTLSDQ 158
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 201 bits (491), Expect = 4e-52
Identities = 90/145 (62%), Positives = 109/145 (75%)
Frame = +3
Query: 93 VMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 272
V++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+ EA++KG
Sbjct: 14 VLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKG 73
Query: 273 RHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFK 452
RH G+GKRRGT AR+P K LW AKKID+H+YH +YMK KGN+FK
Sbjct: 74 RHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFK 133
Query: 453 NKRVLMEYIHRKKAEKARTKMLSDQ 527
NKRVLME IH+ KAEKAR K LSDQ
Sbjct: 134 NKRVLMESIHKSKAEKAREKTLSDQ 158
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 426 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 527
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 108 KKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRARVRKNTEARRKGRH 278
K W D E+N + + R + KM+ D LV+ +A H + T RKGR
Sbjct: 761 KGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRNDEETTSISRKGRA 818
Query: 279 CGFG 290
GFG
Sbjct: 819 QGFG 822
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 108 KKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRARVRKNTEARRKGRH 278
K W D E+N + + R + KM+ D LV+ +A H + T RKGR
Sbjct: 712 KGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRNDEETTSISRKGRA 769
Query: 279 CGFG 290
GFG
Sbjct: 770 QGFG 773
>03_02_0050 + 5272471-5274861
Length = 796
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 599 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 441
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 138 INEIANTNSRQNIRKMIKDGLVIK-KPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 311
+ E N NS + + GL+ + KP+ V S RVR + K GK R TAN
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 203 HQETCSSPLPRPCPQKHR 256
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 195 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 308
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 108 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 254
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSS 367
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 123 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 227
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 189 KDGLVIKKPVAVHSRARVRKNTEARRKGRHC---GFGKRRGTANAR 317
KDG ++ + +RA R +T+A R+ HC G+G RR + R
Sbjct: 174 KDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVRRSLSGGR 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,036,027
Number of Sequences: 37544
Number of extensions: 425545
Number of successful extensions: 1179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -