Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_G09
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    33   0.073
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    29   1.2  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   3.6  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   6.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.4  
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    26   8.4  

>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 32.7 bits (71), Expect = 0.073
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
 Frame = +1

Query: 463 QDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSPITPVVVRRESVDNINTNSIPSLM 642
           + E +S+ N     S D   E     +D   + + S         +S  N + +   S  
Sbjct: 226 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSS 285

Query: 643 QFPVRQPKDS-EEQDNWKSKTDGDSDSNSEQGNMYT 747
                + + S E+ D+  S +D DS S+SE GN  T
Sbjct: 286 DSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNT 321


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 10  RPMVPXSFGXQI---GVIQFHAPHALSLXSAMHHTLQNXAVKHKS 135
           +P  P SF  +I   GV++FH P  L   S  H  +Q  +VK  S
Sbjct: 71  KPNNPFSFKRRIWLHGVLRFHRPLHLFQTSECHELIQEESVKSPS 115


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 648 KLHKGWYRVGIYIVNRFSSDHHRSNGTLSSITAPVGPSPIFFPS 517
           K+ + +YR GIYI+NR S ++     + S+  + +   P + P+
Sbjct: 536 KIAEAYYRYGIYILNRKSENY--LEDSFSAFVSSLRKDPNYAPA 577


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 598 ESVDNINTNSIPSLMQFPVRQPKDSEEQDNWKSKTDG 708
           E  D +  +SIP ++      P+  ++  NW+ KT G
Sbjct: 382 EVYDTLREDSIPEVVIVKKTYPQTKKKNRNWRLKTIG 418


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 436 TEAVKKPEKQDEDNS-DSNTQRRHSGDR-GREKYRRWTDR 549
           +++ +K +K  +D   DS   R HS  +    K R WTDR
Sbjct: 617 SKSAEKDKKDKKDKKEDSKRSRSHSVSKPDSSKLRTWTDR 656


>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 604 VDNINT-NSIPSLMQFPVRQPKDSEEQD 684
           +++IN  NSI  ++ FPV+  KD E  D
Sbjct: 34  IEHINIMNSIDGVISFPVKTAKDCENID 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.125    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,932
Number of Sequences: 5004
Number of extensions: 62431
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)