Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_G09
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0131 - 15576422-15577021 33 0.31
05_05_0147 + 22715144-22715444,22716245-22716407,22716484-227165... 33 0.41
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942... 32 0.72
04_01_0166 - 1861750-1862181,1862317-1863873 30 2.2
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 30 2.2
10_07_0196 + 13978647-13979142,13979242-13980542 30 2.9
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 30 2.9
06_01_0603 - 4350124-4350590,4350995-4353608 30 2.9
09_01_0019 + 403078-404211 29 5.1
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078... 29 5.1
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 29 6.7
03_02_0434 + 8403630-8405666 29 6.7
09_04_0506 - 18188785-18190599 28 8.8
08_01_0108 - 791835-792398 28 8.8
>02_03_0131 - 15576422-15577021
Length = 199
Score = 33.1 bits (72), Expect = 0.31
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 463 QDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSPITPVVVRRES 603
+D D+ D + + DR R++ RR +R R R++SP RR S
Sbjct: 32 RDRDHRDRDRDKERDRDRDRDRERRRGERDRKRSRSPSADRSHRRHS 78
>05_05_0147 +
22715144-22715444,22716245-22716407,22716484-22716532,
22716626-22716739,22716812-22717234,22717307-22717693,
22717777-22717872,22717978-22718093,22718137-22718272,
22718392-22718480,22718586-22718736,22719057-22719185,
22719276-22719354,22719435-22719544
Length = 780
Score = 32.7 bits (71), Expect = 0.41
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 789 HKTWRRHWAWSIWACIHISLF 727
H+ W+R W S+WA ++I+LF
Sbjct: 262 HENWKRIWVLSLWAILNIALF 282
>09_04_0747 +
19892090-19893304,19893471-19893602,19894168-19894215,
19894697-19894766,19894936-19894963,19896021-19896519
Length = 663
Score = 31.9 bits (69), Expect = 0.72
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -1
Query: 671 ESLGCLTGNCIRDGIELVFI-LSTDSLLTTTGVMGL*ARLRPLSVHRRYFS--LPLSPEC 501
+ L C+ RD IE VF+ L +LL GV + R + ++ + L L+P C
Sbjct: 12 KKLECIISRLPRDLIEQVFLSLPVKTLLNCIGVC---KQWRSIIQDPKFVTSHLQLAPHC 68
Query: 500 LLCVFESELSSSC 462
L F EL SSC
Sbjct: 69 ALLFFPRELVSSC 81
>04_01_0166 - 1861750-1862181,1862317-1863873
Length = 662
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 550 GRNRAQSPITPVVVRRESVDNINTNSIPSLMQFPVR-QPKDSEEQ 681
G+ + +PIT +VVR++ V ++ +P + + PV+ QP+D +Q
Sbjct: 115 GKGISNAPIT-LVVRKKGVPDLTLVDLPGITRVPVKGQPEDIYDQ 158
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 527 NIGDGPTGAVIELRVPLLLWWSEENLLTI*IPTLYHPLCN-FLSDNPKILKNRTTGSL 697
N+ GP +E V L++WW ++ +T HP + ++D LK+ T+G+L
Sbjct: 653 NLCGGPVAHSLEHLVALVVWWWKKRAMTKQTDRTGHPSSDPLIADCNICLKSATSGTL 710
>10_07_0196 + 13978647-13979142,13979242-13980542
Length = 598
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 804 NHIRSHKTWRRHWAWSIWACIHISL 730
NH RS WRR W+ +AC + L
Sbjct: 5 NHARSQDFWRRFWSMLSYACSELCL 29
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 442 AVKKPEKQDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSPITP 582
A + P K D N + + D+G+ + RRW R ++ + SP P
Sbjct: 18 AFRSPSKDDSPNKAARLRDDTDDDKGKRERRRWLFR-KSSSPSPAPP 63
>06_01_0603 - 4350124-4350590,4350995-4353608
Length = 1026
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 897 EAIFGLGPILVLVHFRTRAHIWTRTHIGNGANHIRSHKTWRR 772
E I G P V+ H H W R H + + +H WRR
Sbjct: 894 ELITGKRPTDVIFHEGLTLHDWVRRHYPHDVAAVVAHAPWRR 935
>09_01_0019 + 403078-404211
Length = 377
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 439 EAVKKPEKQDEDNSDSNTQRRHSGDRGREKYRRWTDR 549
E K K D + T R S RGR K+RR T R
Sbjct: 201 ERAKSGRKHSRDE-EKKTSRHRSSSRGRSKHRRSTKR 236
>01_06_1258 +
35806557-35806932,35807517-35807679,35807789-35807837,
35807943-35808866,35808954-35809049,35809142-35809257,
35809345-35809447,35809570-35809658,35809750-35809900,
35809995-35810141,35810238-35810366,35810451-35810529,
35810616-35810725
Length = 843
Score = 29.1 bits (62), Expect = 5.1
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = -3
Query: 789 HKTWRRHWAWSIWACIHISLFGVR 718
H+ W+R W ++W +++ LF +
Sbjct: 287 HENWKRIWLVALWLAVNVGLFAYK 310
>03_05_0967 + 29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 28.7 bits (61), Expect = 6.7
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Frame = +1
Query: 460 KQDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSPITPVVVRRESVDNINT---NSI 630
KQ E++ S+ + RGR K RWT + S+DN N +SI
Sbjct: 1222 KQAEEDPMSDDENHEDSRRGRSKLERWTSHKE-----------IDYSSIDNENAPTFSSI 1270
Query: 631 PSLMQFPVRQPKDSEE---QDNWKSKTDGDSDSNSEQ 732
S +Q P E N + K+ GD+ SE+
Sbjct: 1271 KSDVQAPTADELGKSEAAAAGNSELKSGGDNGQTSEK 1307
>03_02_0434 + 8403630-8405666
Length = 678
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 550 GRNRAQSPITPVVVRRESVDNINTNSIPSLMQFPVR-QPKDSEEQ 681
G+ + +PIT +VVR+ V ++ +P + + PV+ QP D +Q
Sbjct: 150 GKGISDAPIT-LVVRKRGVPDLTLVDLPGITRVPVQGQPDDIYDQ 193
>09_04_0506 - 18188785-18190599
Length = 604
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 454 PEKQDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNR 561
PE++ D D+ +R DR RE+ R DR R R
Sbjct: 509 PERRHRDERDAGRERERERDRDRERER---DRDRER 541
>08_01_0108 - 791835-792398
Length = 187
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 493 QRRHSGDRGREKYRRWTDRGRNRAQSPITPVVVRRE 600
+RRHS R R +RR RGR + + VVV E
Sbjct: 45 ERRHSWRRRRRPWRRGGARGRAEVAAVLAEVVVADE 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.125 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,568,322
Number of Sequences: 37544
Number of extensions: 416650
Number of successful extensions: 1086
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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