Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_G09
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   1.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +2

Query: 650 LSDNPKILKNRTTGSLKLMETQILTPNKEICIQAQMDHAQCLLQVLWDLI 799
           L+   +I +   + S   +  + ++P  ++CI A +   Q +L ++W +I
Sbjct: 599 LTKTNRIARIFDSASRTAVRPRYISPASQVCIAAALIALQIVLTLVWMII 648


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +2

Query: 650 LSDNPKILKNRTTGSLKLMETQILTPNKEICIQAQMDHAQCLLQVLWDLI 799
           L+   +I +   + S   +  + ++P  ++CI A +   Q +L ++W +I
Sbjct: 689 LTKTNRIARIFDSASRTAVRPRYISPASQVCIAAALIALQIVLTLVWMII 738


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 505 SGDRGREKYRRWTDRGRNRAQSPITPVVVRRESVDNIN 618
           S +  +EK+RRW        +    P   R E +D+++
Sbjct: 445 SFEDAKEKFRRWVSTMSRPFEVRYDPYTQRVEILDSVD 482


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 662 GCLTGNCIRDGIEL 621
           G L G C R+GIEL
Sbjct: 551 GTLYGRCKREGIEL 564


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 547 RGRNRAQSPITPVVVRRESVDNINTNSIPSLMQFPVRQP 663
           +GR     P+  V  +  S+DNIN  S  S    P+  P
Sbjct: 197 KGRLVITEPVGSVRPKFPSMDNINGLSTESKADLPLLCP 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.125    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,907
Number of Sequences: 438
Number of extensions: 4795
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)