Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_G06
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    30   0.46 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   2.5  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   3.3  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   3.3  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   3.3  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    26   5.7  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   5.7  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    26   5.7  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    26   7.5  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   10.0 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   10.0 

>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 699 KDKYCSFRFAVSNLMQAMNTTAPYFFASGSDSKNVLLILATTFPGISSTALNTLRTLSN 523
           +D + SF  + S +  A  + A    A  SD+     + +TTFP    +   T  TLSN
Sbjct: 183 EDPFASFNSSASAIAAASKSAAASASALSSDTGRSATMNSTTFPTAMKSQSTTKPTLSN 241


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 233  AAKHLGTSVELI--ASDVLDHYRTFALLERLLTVPSKLTEQMIFQ 361
            A + LG S E I  A DV++ YR  A+L  L+ +    T+  +F+
Sbjct: 1117 ADEELGWSAEQICLADDVINEYRRKAILCNLMALSLPFTQDKLFK 1161


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 818 SARAXRAGTRGPSPCRSTPVRCNSTSSCPL 729
           +AR      RGP  CR+     +++S+CPL
Sbjct: 137 AARCSEPRKRGPRVCRTCHTDTHTSSTCPL 166


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 140 SNYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAAKH 244
           S YT++ P++ ++ ++      A  T H R +AKH
Sbjct: 503 SAYTMVPPDLDEICVDFVQKFGAWITYHHRRSAKH 537


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 533 VRRVFKAVEEMPGNVVANIRSTFLLSDPLAKKYGAVVF 646
           VR +F ++ ++  ++      TF  SDP  KKY A  F
Sbjct: 214 VRGLFYSISQLRDSMTYLYDYTFYFSDPSPKKYAADAF 251


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
 Frame = +2

Query: 107 KKMYTEVDVFVSNYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAAKHLGTSVELIASDVLD 286
           KK+ ++++  + N +  D +IY++ + G S S   +   Q       G S E I + +  
Sbjct: 14  KKLNSKIEKQIENASKKDKKIYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTFIPV 73

Query: 287 HYRTFALLERLLTVPSKLTEQMIFQLDEQTKH--MLIEKYYDLDDAVIRELLGRKLSS 454
             R   LLE   T+  K+  Q    LD    H   +IEK+      +I   +G+ ++S
Sbjct: 74  IRRN--LLESAKTL-VKIIVQKGINLDPLGTHNCEIIEKFNPTPGELINANIGQAITS 128


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 23/83 (27%), Positives = 34/83 (40%)
 Frame = +2

Query: 47  NRSRLKSNAKLKHKSVKPNXKKMYTEVDVFVSNYTLIDPEIYQLWIEGCSSSEAVSTLHQ 226
           N    K    + +KSVK   +++   VD   S+ T  D E+  +          VS  H+
Sbjct: 39  NNEEEKDANVILNKSVKMEVEEVNGHVD---SSSTETDIEMQVIQQPTIPKKPPVSA-HR 94

Query: 227 RGAAKHLGTSVELIASDVLDHYR 295
           RG  KH G +   +     DH R
Sbjct: 95  RGPRKHRGNANSQLNLSTADHQR 117


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 314 RLLTVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDAVIRELL 436
           RL+    + T  +  +L+      LI+KYY  D+++  ELL
Sbjct: 57  RLVYRSLRTTSNICHRLNADVLGQLIKKYYSFDNSLKNELL 97


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
 Frame = +2

Query: 323 TVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDAVIRELLGRKLSSRHRKDLDEVAERSGAP 502
           ++ S+  E   F ++E     ++ +     D V  EL G          + EV   + AP
Sbjct: 388 SIQSRALELSTFLVNEANVRFMVRELLSFLDNVSDELRGSTAQY-----ITEVTN-AFAP 441

Query: 503 LRCCRRQFDNVRRVFKAVEEMPGNVVA-NIRSTFL---LSDPLAKKYGAVVFIACMRFET 670
            +  R  FD + RVFK+     GN V+ +  STFL    S P   +Y  V   A ++ + 
Sbjct: 442 NK--RWHFDTLLRVFKSA----GNFVSESTLSTFLRLIASAPELHEYAVVKLYAALKEDV 495

Query: 671 AKRKLQYLSF 700
           ++  L   +F
Sbjct: 496 SQEALTLSAF 505


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +2

Query: 683 LQYL--SFNDFYHCAQA--IMGSWTYCCTGPEYYD 775
           L YL  SFN +YH A+   ++G +  C   P+  D
Sbjct: 470 LNYLNKSFNSYYHAARCFLLLGQFLSCLPAPKVDD 504


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = -2

Query: 651  AMNTTAPYFFASGSDSKNVLL---ILATTFPGISSTALNTLRTLSN*RRQHRRGAPERSA 481
            A+NT+ P   ++  +S   +    +L ++ P  SSTALNT   +++    +   A   S+
Sbjct: 3041 ALNTSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSS 3100

Query: 480  TSSKSFLCLEDNFLPSNSLMTASS 409
              + S      + L S++ +T+SS
Sbjct: 3101 IVNSSTPITSSSVLNSSTAITSSS 3124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,997
Number of Sequences: 5004
Number of extensions: 67995
Number of successful extensions: 208
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)