Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_G06
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831     30   2.6  
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988...    29   3.4  
03_05_0931 - 28912700-28913056,28913245-28913319,28913424-289134...    29   4.5  
01_01_0788 + 6111890-6112002,6112121-6112265,6113012-6113086,611...    29   6.0  
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621...    28   7.9  
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337...    28   7.9  
02_04_0553 - 23808328-23809530                                         28   7.9  

>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
          Length = 512

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -1

Query: 409 QVIIFLYEHVFRLFVQLEDHLLCQL*WYR-EQPLKQCKSSVMIEYIAGYQLYRCS 248
           Q+++ L   +  L  +LED  +  L  +  E+PL+  K ++ I Y++ Y++  CS
Sbjct: 145 QLLVALGHRILELVEKLEDFDIILLPSFELERPLQLAKEAIGIMYLSPYEVGTCS 199


>05_05_0156 +
           22792783-22793410,22797153-22797227,22797644-22798879,
           22798947-22799155,22799240-22800209,22800395-22800465
          Length = 1062

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 26/106 (24%), Positives = 48/106 (45%)
 Frame = +2

Query: 143 NYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAAKHLGTSVELIASDVLDHYRTFALLERLL 322
           N + + P I   W+E C    A   LH     K+   +V +IA     H +T A+L+ L+
Sbjct: 188 NSSSVVPCILPPWLESCQIPSAAEELHSIMCNKNNIRNVLVIAD--AGHGKT-AILDSLV 244

Query: 323 TVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDAVIRELLGRKLSSRH 460
              + +T Q + +      + LI  YY++ +  +R    ++  + H
Sbjct: 245 AT-AGITSQEVTE-----SNSLISLYYEMPEDSLRSYKDKRAGNGH 284


>03_05_0931 -
           28912700-28913056,28913245-28913319,28913424-28913497,
           28913604-28913691,28913785-28913936,28914050-28914209,
           28914303-28914458,28914566-28914784,28915390-28915650,
           28917183-28917389,28917488-28917619
          Length = 626

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 580 RQYKKHILAVRPAREEVRGGGVHSLHEVRDGETE 681
           R ++K    +RPAREE    GV S+  ++  E E
Sbjct: 296 RSFRKATAVLRPAREEALSSGVLSIATIKKTEEE 329


>01_01_0788 +
           6111890-6112002,6112121-6112265,6113012-6113086,
           6114171-6114250,6115500-6115569,6115664-6115759,
           6116633-6116756,6116921-6116967,6117044-6117127,
           6117199-6117252,6117451-6117551,6118744-6118834,
           6119989-6120153,6121341-6121412,6122025-6122111,
           6122899-6122952,6122992-6123062,6123882-6124029
          Length = 558

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +2

Query: 317 LLTVPSKLTEQMIFQLDEQTKHMLIEKY---YDLDDAVIRELLGRKLSSRHRKDLDEVAE 487
           +L   +KLT  + FQ+ E    + +       + D+A +R     K     R+ L  + +
Sbjct: 395 ILDEDAKLTVPLGFQVAEIPLSVWVSMRGVKKEFDEAKLRFAAAEKKVIDIREQLVRIIK 454

Query: 488 RSGAPLRCCRRQFDNVRRVFKA 553
           R G PL  C R  + VR+   A
Sbjct: 455 RFGIPLTSCDRDMEAVRKAIIA 476


>04_04_1032 -
           30259180-30260519,30260650-30260720,30261099-30262118,
           30263886-30264121
          Length = 888

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 392 EKYYDLDDAVIR--ELLGRKLSSRHRKDLDEVAERSGAPLRCCRRQFDN 532
           EKY   +DA++   EL  ++L+S+++       + S  P    RR+FDN
Sbjct: 117 EKYARREDAILHALELERKQLASKYQNQGFRSDDISSVPFADMRREFDN 165


>02_04_0554 -
           23831212-23832163,23833173-23833438,23833694-23833748,
           23834384-23834436,23834512-23834588,23834730-23834862,
           23834958-23835098,23835840-23835960,23836137-23836242,
           23836523-23836592,23836716-23836885,23837253-23837277,
           23837662-23837777,23838926-23839217
          Length = 858

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 655 HEVRDGETEAAIFILQRFLSLRPGHNGQLDVLL 753
           HE+ DG  + A + L R+LS+ P  +  L + L
Sbjct: 660 HELADGTLQRAAYFLDRYLSVTPESDDALQLRL 692


>02_04_0553 - 23808328-23809530
          Length = 400

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 655 HEVRDGETEAAIFILQRFLSLRPGHNGQLDVLL 753
           HE+ DG  + A + L R+LS+ P  +  L + L
Sbjct: 202 HELADGTLQRAAYFLDRYLSVTPESDDALQLRL 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,354,374
Number of Sequences: 37544
Number of extensions: 486986
Number of successful extensions: 1476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)