Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_G04
(844 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 29 1.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 29 1.1
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 28 1.9
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 27 2.5
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.3
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.3
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 27 4.4
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 27 4.4
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 27 4.4
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 4.4
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 5.8
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 26 5.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 5.8
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 26 7.7
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 26 7.7
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 212 TLISHFPMSDAPASYRDILLSDRHVYKGLSFESVIASEVSRVPFETL 352
TL+ HF P Y D +++GL+F + E ++V +TL
Sbjct: 217 TLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 512 IALNPKPLQPWHYNRLGINFNAAYVTQTGLSYG 610
++ N P+ P+ Y R+G+ F QTG++ G
Sbjct: 370 VSANMGPMYPYFYPRIGLFFIVPNCVQTGITIG 402
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +2
Query: 383 KTLMNNNQVLHLIRTRPQYDVVLVESFNSDCGIALAANLSAPYIALNPKPLQPWHYNRLG 562
+ L+ +N I P Y + + F+S L +L+ Y PLQP YN
Sbjct: 254 RILLWDNDAPEKIGDSPDYSIYMKHLFDSQPPAPLVEDLADSYKDYLQVPLQPLSYNLEN 313
Query: 563 INF 571
I +
Sbjct: 314 ITY 316
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Frame = -2
Query: 399 LFMRVL-QSSLPAFVATS--------VSKGTRDTSLAITDSKDKPLYTCLSLNK 265
LF+ L Q+SLP F+ T +++ R + ITD D+P++ C S ++
Sbjct: 291 LFLPYLPQASLPKFIGTGKLLVGTLHINRKNRSDAYVITDVLDEPIFICGSKDR 344
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 500 SAPYIALNPKPLQPWHYNRLGINFNAAYVTQTGLSYGKNPWFLDRVRGYILYHIT 664
SAP I+L+ K L P H+N A+ V Q G+S + G +Y+IT
Sbjct: 424 SAPLISLSSKQLHPRHHN------TASIVVQVGVSLSNT---FGSICGGAIYNIT 469
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/40 (22%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 677 YVGSQITDHVYLYKYLGDNLPSLETLASN--AXLVFVNTH 790
+ S+ H++++ ++ +N+P+L ++ +N +F+N H
Sbjct: 275 FKNSEEYPHLFIHLFMSENIPNLSSIRANWPQHRLFINLH 314
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 236 SDAPASYRDILLSDRHVYKGLSFESVIASEVS 331
S PA+ R++ SDR++ G S S +++ VS
Sbjct: 769 STLPATSRELASSDRNINTGTSVASEVSASVS 800
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 614 NPWFLDRVRGY-ILYHITNWVYYVGSQITDHVYLYKYLGDNLPSLETL 754
NP ++ RG+ IL + V Y S T+ L Y G NLP +ETL
Sbjct: 195 NPDYIAPGRGHVILSKVAPMVLYPISS-TEARILINYPGKNLPPMETL 241
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 4.4
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +2
Query: 371 NDDCKTLMNN-NQVLHLIRTRPQYDVVLVESFNSDCGIALAANLSAPYIALNPKPLQPWH 547
+D+ TL++ + L LI + + D L+ +SD +ALA +L + L+P
Sbjct: 336 SDNIPTLLDQKHNWLDLIASITKNDENLILETSSDYQVALAIDLLDKLLELHPSKRVKAK 395
Query: 548 YNRLGINFNAAYVTQTGLSYGKNPWFLD 631
FNA VT++G +NP+ D
Sbjct: 396 TALQHEFFNACGVTRSGFE-AENPFRSD 422
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 4.4
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = -2
Query: 393 MRVLQSSLPAFVATSVSKGTRDTSLAITDSKD--KP----LYTCLSLNKMSLYEAGASDI 232
MRV+ +L + + ++ K ++ L + D D KP C L+ + LY + S I
Sbjct: 597 MRVVNYALE-YSSKALDKFAENSHLILLDMVDVGKPDLVLTLLCRWLHMVHLYSSRTS-I 654
Query: 231 GKWLIRVTSLFRFASSLN 178
W+ + S F F SLN
Sbjct: 655 TSWIYSIASKFYFIDSLN 672
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 384 LQSSLPAFVATSVSKGTRDTSLAITDSKDKPLYTCLSLNKM 262
L ++LPAF TSV + + ++ + ++ P T S NK+
Sbjct: 163 LPTNLPAFSPTSVERRFTEWNVPLRETSPSPSETADSPNKL 203
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 593 FGLHKLH*N*YLIDCSAKAVKASGSMLCTAHSNLPP 486
+ L K H ++ D V +G MLC HSN+ P
Sbjct: 233 YKLCKAHNVLFIADEVQTGVARTGKMLCIEHSNVKP 268
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 488 AANLSAPYIALNPKPLQPW 544
AA SAP +++NP L PW
Sbjct: 445 AAPQSAPALSMNPSSLPPW 463
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.8 bits (54), Expect = 7.7
Identities = 21/103 (20%), Positives = 45/103 (43%)
Frame = +2
Query: 83 IFVTIILTTDCYKILGIFPSLDRTNYLTYRDLFKELANRNNDVTLISHFPMSDAPASYRD 262
+ VT +L + + G+FP + T + + D N ++TL AP ++ +
Sbjct: 802 LLVTPVLEPNVDYVRGVFPGDNSTIWYDWYDHKVIYRQHNENITL-------SAPLTHIN 854
Query: 263 ILLSDRHVYKGLSFESVIASEVSRVPFETLVATKAGNDDCKTL 391
+ + ++ + S+ E + P++ LVA + C +L
Sbjct: 855 VAIRGGNIIP-MQKPSLTTHETKQNPYDLLVALDSDRKACGSL 896
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 589 PNRLIVRKKSLVPRPSKRLHIVSYYKLGVLCWFTNHRSR 705
P R I R+KSL L I ++G LC FT+ S+
Sbjct: 306 PERRIFRQKSLEKTLVPYLRISQAVRIGDLCAFTDALSK 344
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,459,090
Number of Sequences: 5004
Number of extensions: 73321
Number of successful extensions: 206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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