Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_G01
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    87   4e-18
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    34   0.032
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    30   0.52 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    28   1.6  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    28   2.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.6  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    27   4.8  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   6.4  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   6.4  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   8.4  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 5/175 (2%)
 Frame = +3

Query: 393 ENANYYRLPNNILPKNYNLTLKPNMKDNIFKGTVNIAIEVLTSTNKITMHAYKLTIESVI 572
           ++ N   LP N+ P +Y+L+L P+++   + G V + ++VL  +N IT+H   L I +  
Sbjct: 13  DDKNRNLLPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAA 72

Query: 573 LK-DSKNVEVSISSTNISTDKRELLRIHLNDQIQRGKYNVEIVFQGNMDKKIIGFYSSSL 749
           L+  S+ V  S  S     D+R +L+             + + F   +   + GFY SS 
Sbjct: 73  LEWGSQTVWASEVSYG---DERIVLQFPSTVPANSVAV-LTLPFTARISSGMEGFYRSSY 128

Query: 750 --KNGGT--MVASKFQPTYARQAFPCFDEPDFKATYDIALVKPQGYVALSNMNEI 902
              +G T  +  ++ +PT AR+AFPC+DEP  KAT+ I +   + Y  LSNMN +
Sbjct: 129 VDSDGNTKYLATTQMEPTSARRAFPCWDEPALKATFTIDITAKENYTILSNMNAV 183


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = +3

Query: 324 KTCESDDCVPMTVREETNLSNVTENANYYRLPNNILPKNYNLTLKPNMKDNIFKGTVNIA 503
           KT  SD+     +  E N ++V     +   P +++P N N+    ++KDN+   ++  +
Sbjct: 275 KTLRSDENAKYDIEVEINAADVLPTVTWGTSPQDVIPINGNIPDPAHVKDNVRAASIQRS 334

Query: 504 IEVL 515
           +E +
Sbjct: 335 LEYM 338


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 531 ITMHAYKLTIESVILKDSKNV-EVSISSTNISTDKRE 638
           I +HAYK T+ S+I  DS+N+ + ++S   +S  K +
Sbjct: 190 INLHAYKGTVTSIINDDSRNINKKTLSKQPVSEHKEK 226


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 369 ETNLSNV-TENANYYRLPNNILPKNYNLTL 455
           ET L ++ T+NAN++RL   I  K + LTL
Sbjct: 700 ETQLKDLKTQNANFHRLEQEIQLKQHELTL 729


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
 Frame = +3

Query: 585 KNVEVSISSTNISTDKRE-----LLRIHLNDQIQRGKYNV-EIVFQGNMDKKIIGFYSSS 746
           KNV ++   T    DKR       L I   D+I   K  +  I++    D   + F    
Sbjct: 64  KNVTINDIPTPFRVDKRRGFLGSALHIVPADEIPSSKSCILTILYSTTKDCTALQFLKPE 123

Query: 747 LKNGGTM--VASKFQPTYARQAFPCFDEPDFK 836
              GG    V S+ Q  +AR   PC D P  K
Sbjct: 124 QTIGGKFPYVFSECQAIHARSFIPCQDTPSVK 155


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +3

Query: 555 TIESVILKDSKNVEVSISSTNIST 626
           ++ S IL  S +VEVSISS+++S+
Sbjct: 143 SVSSAILPSSTSVEVSISSSSLSS 166


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 274 NDKSPRRMMMLFLNKHCESFGVILHSPSPFTFGNFQIVSRKNYNN 140
           +DK+  ++   ++N    S   +L+SP       FQ    KN  N
Sbjct: 174 DDKNVTKVAWTYINDSTRSIACLLYSPKTIAAAAFQFALEKNEIN 218


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/82 (21%), Positives = 38/82 (46%)
 Frame = +3

Query: 417 PNNILPKNYNLTLKPNMKDNIFKGTVNIAIEVLTSTNKITMHAYKLTIESVILKDSKNVE 596
           P N+ P+ Y+L  K +   +  +  ++   +  +ST  ++ H   ++    I + SK+++
Sbjct: 55  PTNLTPQTYSLESKSSNLVSDCELKISSVYQSYSSTFNVSNHVPSISKTVNIRETSKHLK 114

Query: 597 VSISSTNISTDKRELLRIHLND 662
            S  +   S     L   HLN+
Sbjct: 115 HSTKAPKCSLPTSALEIDHLNN 136


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 648 IHLNDQIQRGKYNVEIVFQGNMDKKIIGFYSSSL-KNG 758
           +H  D I R   +  ++ +GN   ++I F SSSL KNG
Sbjct: 627 LHSFDIIHRDIKDENVILEGNGCARLIDFGSSSLTKNG 664


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 348 VPMTVRE-ETN-LSNVTENANYYRLPNNILPKNYNLTLKPN 464
           VP T  E  TN LS+ T + N      N++P N+N++++PN
Sbjct: 197 VPTTPDEVSTNRLSSSTSSMNC----RNLVPDNFNISIRPN 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,689,445
Number of Sequences: 5004
Number of extensions: 77492
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)