Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_G01
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 95 9e-20
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 87 2e-17
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 85 7e-17
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 80 3e-15
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670... 32 0.54
10_08_0356 + 17141107-17141165,17141502-17141650,17141748-171419... 31 1.7
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 29 3.8
01_03_0242 + 14113721-14113966,14114102-14114260,14114495-141148... 29 5.1
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 29 6.7
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 94.7 bits (225), Expect = 9e-20
Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 7/168 (4%)
Frame = +3
Query: 411 RLPNNILPKNYNLTLKPNMKDNIFKGTVNIAIEVLTSTNKITMHAYKLTIE--SVILKD- 581
RLP P+ Y+L L P++ F G+V+++++V T + ++A +L + V K
Sbjct: 16 RLPGFAAPRRYDLRLVPDLDGCAFTGSVDVSVDVTAPTRFLVLNAAELEVSPGGVQFKPH 75
Query: 582 SKNVEVSISS-TNISTDKRELLRIHLNDQIQRGKYNVEIVFQGNMDKKIIGFYSSSLKNG 758
E+ + TN+ D E+L I N+ + G+ + I F+G ++ K+ GFY S +
Sbjct: 76 GAEQELHPAEVTNVPED--EILIIRFNEVLPVGEGTLVIAFKGTLNDKMHGFYRSVYELN 133
Query: 759 G---TMVASKFQPTYARQAFPCFDEPDFKATYDIALVKPQGYVALSNM 893
G M ++F+P AR+ FPC+DEP FKA + I L P VALSNM
Sbjct: 134 GEKKNMAVTQFEPADARRCFPCWDEPSFKAIFKITLEVPSETVALSNM 181
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 86.6 bits (205), Expect = 2e-17
Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 5/166 (3%)
Frame = +3
Query: 411 RLPNNILPKNYNLTLKPNMKDNIFKGTVNIAIEVLTSTNKITMHAYKLTIE--SVILKDS 584
RLP P+ Y L L+P++ +F G ++A++V T + ++A L ++ S+ +
Sbjct: 13 RLPRFAAPRRYELRLRPDLAACVFSGEASVAVDVSAPTRFLVLNAADLAVDRASIRFQGL 72
Query: 585 KNVEVSISSTNISTDKRELLRIHLNDQIQRGKYNVEIVFQGNMDKKIIGFYSSSLKNGG- 761
EVS+ ++ E+L + ++ G+ + + F G ++ ++ GFY S + G
Sbjct: 73 APAEVSVF------EEDEILVLEFAGELPLGEGVLAMRFNGTLNDQMRGFYRSKYEYKGE 126
Query: 762 --TMVASKFQPTYARQAFPCFDEPDFKATYDIALVKPQGYVALSNM 893
M ++F+ AR+ FPC+DEP FKA + + L P VALSNM
Sbjct: 127 TKNMAVTQFESVDARRCFPCWDEPSFKAKFKLTLEVPSELVALSNM 172
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 85.0 bits (201), Expect = 7e-17
Identities = 47/165 (28%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Frame = +3
Query: 411 RLPNNILPKNYNLTLKPNMKDNIFKGTVNIAIEVLTSTNKITMHAYKLTIESVILKDSKN 590
RLP P+ Y L L+P++ +F G ++ ++V T + ++A L ++ ++
Sbjct: 19 RLPRFAAPRRYELRLRPDLDACVFTGDASVVVDVSAPTRFLVLNAADLAVDRASIRFQ-- 76
Query: 591 VEVSISSTNIST-DKRELLRIHLNDQIQRGKYNVEIVFQGNMDKKIIGFYSSSLKNGG-- 761
++ T +S + E+L + + ++ G+ + + F G ++ ++ GFY S + G
Sbjct: 77 ---GLAPTEVSLFEDDEILVLEFDGELPLGEGVLAMDFNGTLNDQMRGFYRSKYEYKGET 133
Query: 762 -TMVASKFQPTYARQAFPCFDEPDFKATYDIALVKPQGYVALSNM 893
M ++F+ AR+ FPC+DEP FKA + + L P VALSNM
Sbjct: 134 KNMAVTQFEAVDARRCFPCWDEPAFKAKFKLTLEVPSELVALSNM 178
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 79.8 bits (188), Expect = 3e-15
Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Frame = +3
Query: 411 RLPNNILPKNYNLTLKPNMKDNIFKGTVNIAIEVLTSTNKITMHAYKLTIESVILKDSKN 590
RLP P +Y+L L+P++ F G+ +A+ V T + ++A +L ++ S +
Sbjct: 13 RLPRCASPLSYDLRLRPDLAACAFSGSAAVAVAVSAPTRFLVLNAAELAVDG-----SSD 67
Query: 591 VEVSISSTNISTDKRELLRIHLNDQIQRGKYNVEIVFQGNMDKKIIGFYSSSLKNGG--- 761
+ + S + ++ E++ I + G+ +++ F G ++ ++ GFY S + G
Sbjct: 68 L---VPSEVVQFEEDEIVVIGFGQDLPIGEGVLKMDFTGTLNDQMRGFYRSKYEYKGESR 124
Query: 762 TMVASKFQPTYARQAFPCFDEPDFKATYDIALVKPQGYVALSNM 893
M ++F+ AR+ FPC+DEP FKA + + L P VALSNM
Sbjct: 125 NMAVTQFEAADARRCFPCWDEPAFKAKFKLTLEVPSELVALSNM 168
>03_06_0470 +
34164873-34165856,34166335-34166568,34166680-34167006,
34168426-34168716
Length = 611
Score = 32.3 bits (70), Expect = 0.54
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 768 VASKFQPTYARQAFPCFDEPDFKATYDIALVKP 866
V S+ Q +AR FPC D P + T+D+ L P
Sbjct: 126 VFSQCQSIHARSVFPCHDTPAARITFDLLLNVP 158
>10_08_0356 +
17141107-17141165,17141502-17141650,17141748-17141969,
17142051-17142187,17142319-17142570,17143915-17144063,
17144476-17144540,17144633-17144701,17145014-17145144,
17145218-17145505,17145669-17145811,17145898-17145951,
17146000-17146080,17149048-17149222,17149223-17149647,
17149929-17150144,17150279-17150309
Length = 881
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +3
Query: 405 YYRLPNNI----LPKNYNLTLKPNMKDNIFKGTVNIAIEVLTSTNK-ITMHAYKLTIESV 569
+Y L NI L +N+N ++P +NIF GTV + E + + + +T+ TI V
Sbjct: 428 FYSLNYNIAIVSLKRNFN-AVRP---ENIFSGTVEMPSEKVVAIGRDVTLGPLMATIGKV 483
Query: 570 ILKDSKNVEVSISSTNISTDK 632
I N ++ +ST K
Sbjct: 484 IQHGKNNCKLDCKDLKVSTCK 504
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 904 DISFMXDNATYPWGLTSAISYVALKSGSSKQGNAW 800
D+S + +N+T WG S K G S G+ W
Sbjct: 704 DVSALHNNSTIKWGEVKVRSSKRFKFGDSSAGDTW 738
>01_03_0242 +
14113721-14113966,14114102-14114260,14114495-14114868,
14114939-14115419,14115651-14116192,14116253-14116531,
14116837-14116918,14116994-14117086,14117173-14117367
Length = 816
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +3
Query: 645 RIHLNDQIQRGKYNVEIVFQGNMDKKII------GFYSSSLKNGGTMVASKFQPTYARQA 806
R+H + G Y + F + DK++I G + K+GG + + + Y R
Sbjct: 661 RLHKRKMAEVGNY-LATSFLAHSDKRVIMVPYHFGAHGRYKKHGGYVKNASREKLYIRGH 719
Query: 807 FPCFDEPDFKATY 845
+PC+ +P Y
Sbjct: 720 WPCYKQPSLTNLY 732
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 723 FSYPCFLGIQFPHCIFPSVFDHLSVF 646
F YP + G PH FP +F H S++
Sbjct: 360 FDYPLYHGEVDPHLPFPPLFGHASMY 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,502,979
Number of Sequences: 37544
Number of extensions: 436100
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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