Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_F24
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 36 0.032
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 36 0.032
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 30 1.2
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 30 1.2
U50311-10|AAA92314.1| 135|Caenorhabditis elegans Inhibitor of s... 30 1.6
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 2.8
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 29 2.8
AC006693-2|AAF60378.2| 334|Caenorhabditis elegans Serpentine re... 29 2.8
AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical ... 28 6.5
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 35.5 bits (78), Expect = 0.032
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 133 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 312
VK D + C + C + P+CA GE +F NEC M +CE K ++ QG C
Sbjct: 383 VKPDRTAECECPNRCEDV-MRPVCA-TNGE---TFDNECEMKKKSCETKSMIKVKHQGTC 437
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 35.5 bits (78), Expect = 0.032
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 133 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 312
VK D + C + C + P+CA GE +F NEC M +CE K ++ QG C
Sbjct: 391 VKPDRTAECECPNRCEDV-MRPVCA-TNGE---TFDNECEMKKKSCETKSMIKVKHQGTC 445
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 208 GKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQCPGSDGIRLS 339
G TG K + NEC+ NN CEH + + I C G LS
Sbjct: 107 GFTGAKCQYDANECMANNGGCEH-ECVNTIGTYYCRCWPGFELS 149
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 208 GKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQCPGSDGIRLS 339
G TG K + NEC+ NN CEH + + I C G LS
Sbjct: 107 GFTGAKCQYDANECMANNGGCEH-ECVNTIGTYYCRCWPGFELS 149
>U50311-10|AAA92314.1| 135|Caenorhabditis elegans Inhibitor of
serine protease likeprotein protein 2, isoform a
protein.
Length = 135
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 133 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 312
+ A A K C + + C + G PK+ +C+MN C+ KD + S G+C
Sbjct: 10 IVAVATATKTCEANEELVSCHNTCEPQCGYTPKACTEQCIMN--TCDCKDGFVRNSLGKC 67
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +1
Query: 157 KACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCE 273
K C H+CT DP+C + N CV CE
Sbjct: 113 KDCNHNCTNTEFDPVC----DTNGSVYRNLCVFQMRRCE 147
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 178 CSHACRPSCAQHQPSPASGPAC 113
C AC PSC Q +PA P C
Sbjct: 178 CMPACLPSCVQSSCAPACQPMC 199
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 178 CSHACRPSCAQHQPSPASGPAC 113
C +C+PSC Q +PA P C
Sbjct: 225 CMPSCQPSCVQQACAPACQPMC 246
>AC006693-2|AAF60378.2| 334|Caenorhabditis elegans Serpentine
receptor, class h protein271 protein.
Length = 334
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 479 MSLFVVIVFIKKSKMFYVFLTSFKQKC 559
+S+F+V++FI +F++F + KC
Sbjct: 192 LSVFLVVIFIISEILFFIFYVKIQMKC 218
>AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical
protein Y22F5A.2 protein.
Length = 346
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 437 SFICQYYEYNLSKAMLLVPTINNV 366
SF C + + N S+ + +VP +NN+
Sbjct: 311 SFFCNFCQQNQSRTITIVPPVNNL 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,016,696
Number of Sequences: 27780
Number of extensions: 283682
Number of successful extensions: 864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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