Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F23
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   2.4  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    26   2.4  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    26   2.4  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   4.2  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    25   5.6  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    25   7.3  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    24   9.7  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    24   9.7  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   9.7  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   9.7  
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    24   9.7  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           24   9.7  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    24   9.7  

>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +3

Query: 216 RKMCKDLHKAVKLE------VDGRPVELPAVEGIIILNILSWG 326
           R + KDL  A +LE      +  R ++ P + G   LN+L WG
Sbjct: 217 RSITKDLISASRLEGRELPSIPYRVLDAPGLAGDFYLNLLDWG 259


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 42  QSEDNSQILVMNNYFGIGIDADLCLDFHNAR 134
           QSE+N+ +L +N Y  +G D +   +  N R
Sbjct: 130 QSEENANMLKLNFYHSLGFDLETAENTGNKR 160


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 303 ILNILSWGSGA-NPWGPEKDD 362
           I NI+   SGA NPWG E DD
Sbjct: 277 ISNIVYRPSGAVNPWGSESDD 297


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 247 SNLKWTVDLWNCQLSRESSYL 309
           S+  WTV LW C  SR    L
Sbjct: 422 SSFDWTVRLWQCSPSRNQHEL 442


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 276 ELPAVEGIIILNILSWGSGANPWGPEKDD 362
           +L  +E +I ++++ W  G N W  +K++
Sbjct: 60  KLKGLENVIPVHVVGWLMGPNGWNFDKEN 88


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 231 DLHKAVKLEVDGRPVELPAVEGIIILNILSWGSGANPWGPEK 356
           DL K ++ E       +P +  ++I + L W S    W P+K
Sbjct: 21  DLQKTIQEEYKLWKQNVPFLYDLVITHALEWPSLTIQWLPDK 62


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 355 FSGPHGFAPEPQLSMLSMMIPSTAGSSTGRPSTSSL 248
           FS   GF P       S++ P+ AG     P T++L
Sbjct: 197 FSSGTGFTPGVNEPFRSLLTPTGAGFPAPSPGTANL 232


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +3

Query: 138 ENPNKFNSRLRNKGVYVKMGLRKMVGRKMCKDLHKAVKLEVDGR 269
           + PNK   + R KGV    G  KMV  +M KDL    +L   GR
Sbjct: 762 KGPNK-GLKSRPKGV---KGKYKMVDSRMKKDLRAQKRLAKKGR 801


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 161 QAEKQRCLREDGL 199
           + E+Q C+REDGL
Sbjct: 107 ELERQNCMREDGL 119


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 343 HGFAPEPQLSMLSMMIPSTAGSSTGRPSTSSLTALCRSLHILRPTILRKPIFT 185
           HGF P P LS  ++    +  +S     T  +TA  RS     P++  K +F+
Sbjct: 376 HGFCPSPYLSSAALHFSISYPAS----FTYVVTAAERSYFNFIPSLFSKSVFS 424


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +2

Query: 29  DHRISERGQLADPGNEQLFRD 91
           D+  ++R   +DPG++++FR+
Sbjct: 130 DYAFNQRSLQSDPGSDEMFRN 150


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 313 MLSMMIPST-AGSSTGRPSTSSLTALCRSLHIL 218
           ++ +++ S    SS+ R ++S  T+ CR LH L
Sbjct: 842 VIELLVASVYINSSSWRTTSSGETSFCRMLHFL 874


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 268 RPSTSSLTALCRSLHILRP 212
           R STSS+TA+ + L  LRP
Sbjct: 84  RTSTSSMTAVPKPLKFLRP 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,960
Number of Sequences: 5004
Number of extensions: 31265
Number of successful extensions: 110
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)