Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F23
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.056
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.91 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   1.2  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   2.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   6.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.9 bits (59), Expect = 0.056
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +2

Query: 23   ICDHRISERGQLADPGNEQLFRDRHRCRLMSRFP*RTRGKPEQVQQQAEKQR 178
            I DH  S++ Q   P  +Q  + + + +  S+ P + + +P+Q QQQ ++Q+
Sbjct: 1492 IVDHS-SQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQ 1542


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 295 PSTAGSSTGRPSTSSLTALCRSLH 224
           P+T  +    P+  S+ ALC +LH
Sbjct: 448 PATTAAPPQLPTEESVDALCNTLH 471


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 301 MIPSTAGSSTGRPSTSSLTALCRSLHI 221
           ++P+T  S T  PST++ T + +  HI
Sbjct: 378 LVPTTTASPTTEPSTTTSTTISQK-HI 403


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 133 RALWKSRHKSASMPI 89
           R  WK  HK ASM I
Sbjct: 60  RMKWKKEHKMASMNI 74


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 340 GFAPEPQLSMLSMMIPSTAGSSTGRPSTSSLTALCRSLH 224
           G    PQL MLS + P     S G P    L  +  +LH
Sbjct: 322 GSVNTPQLLMLSGIGPKEHLRSLGIPVVVDLPGVGENLH 360


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 150 CSGFPRVRYGNRDISL 103
           CSG+P +R G     L
Sbjct: 22  CSGYPSIRQGTTSYCL 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,258
Number of Sequences: 438
Number of extensions: 2519
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)