Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F21
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   3.4  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   3.4  

>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +1

Query: 13  DQLGSVRHQPVT*ISNDNTNQDDNKLISNNSSCIKEK 123
           D +G+VR  P    SND  N+ ++ +++++ + +KE+
Sbjct: 453 DGVGTVRRPPSLVSSNDELNKKNDIVVAHHDNEVKER 489


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 184  IWYQCKSSILTYVYFNRI*IFSL*YSLNYCLLIYCRLGSYYHLKFMLLADV 32
            I+Y C  +  TYV  +   I S+ Y++N C+ +Y     Y+   F  + DV
Sbjct: 1288 IFYPCPIAY-TYVRNSIFLILSICYTINICVKVYGLSFYYFFHSFWNMFDV 1337


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 329 HKILYRET--MWSEIMHENLEQGSLHA 403
           H I++RET  +WSE+M     Q S++A
Sbjct: 78  HVIVWRETGGVWSELMDHTAHQASVNA 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,473
Number of Sequences: 5004
Number of extensions: 56146
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)