Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F21
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)               58   9e-09
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.2  
SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)                 29   4.8  
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     28   6.4  
SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)               28   6.4  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)
          Length = 344

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
 Frame = +1

Query: 511 CYYGSGVKP--GTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFXTPALLNLV 681
           CYYG G+    G +  S +WPQ V++RI  TY Y AGSL +TAG+A ++  + A+  ++
Sbjct: 129 CYYGLGLSSEVGAIDRSVMWPQVVRDRIHATYAYFAGSLAVTAGAAYSISRSRAVYTMM 187


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -3

Query: 223  GSCIFMNYCVFTNIWYQCKSSILTYVYFNRI*IFSL*YSLNY-CLLIYCRLGSYYHLKFM 47
            G  +  NY     I     S  L Y+YF  I +F+L  SL Y CL   C       L+++
Sbjct: 1685 GLSVSWNYLYLGTICIFALSVSLRYLYFCTICVFALSVSLRYLCLCAICVFALSVSLRYL 1744

Query: 46   LLADV 32
             L  +
Sbjct: 1745 YLCAI 1749


>SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 480 WSL-CSWTSCSVLLWLWGKTRYSSGISPLATICERTYKNXIWI 605
           W++ C W   + + W +GK      ++P  T+ E  Y N I I
Sbjct: 217 WNIDCQWIDVTDMAWKFGKFYLRIVVNPNRTVAETDYDNNIGI 259


>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 978

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/71 (26%), Positives = 35/71 (49%)
 Frame = +3

Query: 255 INYVITNVYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSNKGRYTLTTHTSGETHG 434
           I+YV+ ++ +    Q NAE ++A     C++K+     C++T  +  + L  HT    +G
Sbjct: 59  ISYVVDDIQK----QANAEQQMADDVTACSKKIYQCDQCSKTFTR-PHDLRRHTKSIHNG 113

Query: 435 TCWTKCIQLGQ 467
               KC   G+
Sbjct: 114 EKPYKCEHCGR 124


>SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)
          Length = 326

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 441 WTKCIQLGQGCI-SWS-LCSWTSCSVLLWLWGKTRYSSGISPL 563
           W KC QL + C  +W    SW+SCSV   L  KTR     +PL
Sbjct: 187 WGKC-QLQEHCPGNWGEWSSWSSCSVTCDLGTKTRTRKCDNPL 228


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 262 MLSRMCIGRSAFN-VTQSLKSPVPQNFVPRNYVVRNYAREPRTRVATRSQPTLRE 423
           M S  C+G S +  VT+++  P P + + +     N        +AT + P L+E
Sbjct: 574 MASPQCLGYSHYRTVTKTICLPSPDDIINQTLTAVNQIHAKAVYIATDNNPMLQE 628


>SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)
          Length = 167

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
 Frame = +3

Query: 438 CWTKC-IQLGQGC--ISWSLCS---WTSCSVLLW 521
           CWTKC I  G  C  +  + C+   WT C+++ W
Sbjct: 98  CWTKCAIVHGTKCAIVHGTKCAIVCWTKCAIVCW 131


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 389 GSLHAHNPHFGRDSWHLLDQMHSAW 463
           G  H H P  G+D  H   Q  SAW
Sbjct: 407 GPYHQHPPRHGQDGGHPSQQPRSAW 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,946,341
Number of Sequences: 59808
Number of extensions: 439580
Number of successful extensions: 1258
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)