Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_F18
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 40 5e-04
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 33 0.033
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 31 0.13
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 31 0.13
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 31 0.17
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 31 0.23
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.40
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 29 0.70
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.92
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 29 0.92
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 28 1.6
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 28 1.6
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 28 1.6
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 28 1.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 2.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.8
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.8
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 26 4.9
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 26 6.5
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 6.5
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.5
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 8.6
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 39.5 bits (88), Expect = 5e-04
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 12/167 (7%)
Frame = +1
Query: 94 QRAQKQIRRLKSMLSQA---KRDLEKKDSEIFQ----LTKEVVELRLYKTSICSPDEKST 252
Q KQ++ S L Q + + E+K+S + L ++++L S+ E
Sbjct: 626 QTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVD 685
Query: 253 SSE--IVTIRENAEDALHNQSTSKCE-KSCRNFDVIDSPLFKDETPTRCRNEMQGSFTDS 423
S E I T++E+ + SK E K+ R +VID+ K ET RN++ S +D+
Sbjct: 686 SLEKNIQTLKEDLRKSEEALRFSKLEAKNLR--EVIDNLKGKHETLEAQRNDLHSSLSDA 743
Query: 424 GHFDDLTNSSL-HSKESVHMLTHEVSCMTDINNAEEERH-SLIAFYE 558
+ + + +S L S E V LT V +T + A ++ SL+ Y+
Sbjct: 744 KNTNAILSSELTKSSEDVKRLTANVETLTQDSKAMKQSFTSLVNSYQ 790
Score = 28.3 bits (60), Expect = 1.2
Identities = 44/215 (20%), Positives = 91/215 (42%), Gaps = 4/215 (1%)
Frame = +1
Query: 106 KQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVVELRLYKTSICSPDEKSTSS----EIVTI 273
K I L + +S+ D K + + + E +E L T D ++++S E+V +
Sbjct: 319 KLIEDLSTRISEF--DNLKSERDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVEL 376
Query: 274 RENAEDALHNQSTSKCEKSCRNFDVIDSPLFKDETPTRCRNEMQGSFTDSGHFDDLTNSS 453
+E+ +H+Q T E +F+ + L K +E Q + + +S
Sbjct: 377 KESNR-TIHSQLTD-AESKLSSFEQENKSL-KGSI-----DEYQNNLSSKDKMVKQVSSQ 428
Query: 454 LHSKESVHMLTHEVSCMTDINNAEEERHSLIAFYEKKIEDVVRSHVGETQELKKAHNDKV 633
L S L H + +IN+ + ++ I +E KIE +R+ + + K + +
Sbjct: 429 LEEARS--SLAHATGKLAEINSERDFQNKKIKDFE-KIEQDLRACLNSSSNELKEKSALI 485
Query: 634 EALLQKLADVNTRYCELLPNYEQAKERIHSLEKQL 738
+ Q+L ++ + E E + + SL++ +
Sbjct: 486 DKKDQELNNLREQIKEQKKVSESTQSSLQSLQRDI 520
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 33.5 bits (73), Expect = 0.033
Identities = 34/153 (22%), Positives = 69/153 (45%)
Frame = +1
Query: 271 IRENAEDALHNQSTSKCEKSCRNFDVIDSPLFKDETPTRCRNEMQGSFTDSGHFDDLTNS 450
+ +N EDA + S + +N V L +++TP +++G F + ++L +
Sbjct: 43 LSQNEEDAKNMDSVVQKLNELQNNVVAFQKLLQEKTPLSSIQDLEG-FRE--FMENLEHR 99
Query: 451 SLHSKESVHMLTHEVSCMTDINNAEEERHSLIAFYEKKIEDVVRSHVGETQELKKAHNDK 630
+ V L+HEV N+ + +R +L +E +IE + S + L D+
Sbjct: 100 YEMTVSEVRRLSHEV------NDLQTDRENLKHQFEDQIEK-LNSEISNQNSLILQKKDE 152
Query: 631 VEALLQKLADVNTRYCELLPNYEQAKERIHSLE 729
+E +Q+ +++ + L +E I SL+
Sbjct: 153 LEKSIQRCSELEEKINSLESAQSIEQEVISSLK 185
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +1
Query: 160 KKDSEIFQLTKEVVELRLYKTSICSPDEKSTSSEIVTIRENAEDALHNQSTSKCEKSCRN 339
++DS++ +L +++ L + ST IR +D + + CEK
Sbjct: 451 ERDSDVEELREQLENLTALTKKLSERLSSSTFDNSKFIRTEDKDTVRSAKLEICEKFFSF 510
Query: 340 FDVIDSPLFKD 372
DV D P KD
Sbjct: 511 ADVTDDPTLKD 521
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 31.5 bits (68), Expect = 0.13
Identities = 25/95 (26%), Positives = 36/95 (37%)
Frame = +1
Query: 118 RLKSMLSQAKRDLEKKDSEIFQLTKEVVELRLYKTSICSPDEKSTSSEIVTIRENAEDAL 297
R K L A D+ KD EI K++ + T P SS + + +
Sbjct: 652 RNKVSLKGASVDISSKDKEIISQKKQLSPKLIPSTPYDLPSSSQISSSALAQLPPSMQSD 711
Query: 298 HNQSTSKCEKSCRNFDVIDSPLFKDETPTRCRNEM 402
Q ++S + PLF E PT RNE+
Sbjct: 712 IQQQLRLQKRSITEYPSQLDPLFMVELPTPIRNEV 746
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/73 (23%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Frame = +1
Query: 103 QKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVVELR--LYKTSICSPDEKSTSSEIVTIR 276
+ Q+ L S S+ + +L KK++E+ KE+ E R L+K + +P++ +++ +
Sbjct: 1045 ESQLASLVSKYSETESELNKKEAELVIFQKEITEYRDQLHK-AFQNPEKTHNINDVKSGP 1103
Query: 277 ENAEDALHNQSTS 315
N+++ +++ S++
Sbjct: 1104 LNSDENIYSTSST 1116
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 30.7 bits (66), Expect = 0.23
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +1
Query: 169 SEIFQLTKEVVELRLYKTSICSPDEKSTSSEIVTIRENAEDALHNQSTSKCEKSC-RNFD 345
SE+ TK +++ + +C P EK +S I T R ++++ S+S SC R F+
Sbjct: 117 SELNDFTKSLIQPSML---MCEPKEKPDASSINTNRSSSDNGFLTPSSSPRSPSCSRVFN 173
Query: 346 VID--SP-LFKDETPTRCRNEMQGSFT 417
+ SP KD+ T + M+ +++
Sbjct: 174 AVQLCSPKKSKDDITTPKKRLMEDTYS 200
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.9 bits (64), Expect = 0.40
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +1
Query: 445 NSSLHSKESVHMLTHEVS-CMTDINNAEEERHSLIAFYEKKIEDVVRSHVGETQELKKAH 621
+S+L K+ + + +T + E+ SL+ E + SH TQ+L+
Sbjct: 1045 DSALSFKKDYEKIRSDADRVITSLKEDIEKERSLMKECHSNYESEIVSHGRTTQKLRD-- 1102
Query: 622 NDKVEALLQKLADVNTRYCELLPNYEQAKERIHSLEK 732
L + +VNT+Y +L N+EQ + EK
Sbjct: 1103 ------LRTEFDEVNTKYLKLKANFEQQHSGLSGAEK 1133
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 29.1 bits (62), Expect = 0.70
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = +1
Query: 517 NAEEERHSLIAFYEKKIEDVVRSHVGETQELKKAHNDKVEALLQKLADVNTRYCELLPNY 696
N++ L A + +K E + H ++KK+ D + L++K T+Y L+ +
Sbjct: 443 NSDTTEQILEAPWLRKTEQIAVVHEEHPAQIKKSEIDILNNLIEKEEGELTKYQTLVKSK 502
Query: 697 EQAKERIHSLEKQL 738
+ ++++ +KQL
Sbjct: 503 TEILTQLYTRKKQL 516
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 28.7 bits (61), Expect = 0.92
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 517 NAEEERHSLIAFYEKKIEDVVRSHVGE-TQELKKAHNDKVE 636
N+EEER+S++ +K+I + + + + E +ELK +K+E
Sbjct: 1004 NSEEERNSVVLRGDKEIVEALETRLLEIVEELKNQVEEKIE 1044
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 28.7 bits (61), Expect = 0.92
Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Frame = +1
Query: 244 KSTSSEIVTIRENAEDALHNQSTSKCEKSCRNFDVIDSPLFKDETPTRCRNEMQG-SFTD 420
K T + + ++ ED + C++ ++ DS ++ + N+ Q +F +
Sbjct: 102 KDTKTALTKKYKSNEDVSRMRKKGNKYPQCKSKNLYDSLKLEECIESWSLNQKQNENFYE 161
Query: 421 SGHFD--DLTNSSLHSKESVHMLTH--EVSCMTDINNAE----EERHSLIAFYEKKIEDV 576
H + D +N S +E+ + E+S M +++ E +E+ +L A K+ D
Sbjct: 162 HTHLNSRDDSNPSSCDRETFFLSDEDSEISLMEGLSSIENGYPDEKETLAALDNVKLSDE 221
Query: 577 VRSHVGETQELKKAHNDKV 633
+H+G + + + DK+
Sbjct: 222 NAAHLGYLVKYFQNYTDKI 240
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 27.9 bits (59), Expect = 1.6
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Frame = +1
Query: 274 RENAEDALHNQSTSKCEKSCRNFDVIDSPLFKDETPTRCRNEMQGSFT-------DSGHF 432
R++A D + + T ++ C V+ P F R + F D+G+F
Sbjct: 478 RDDAWDFVCHCITDPKDRFCSLKQVMQHPYFSKIDWKNVRTAYRPPFVPDLNSEIDAGYF 537
Query: 433 DDLTNSSLHSK-ESVHMLTHEVSCMTDINNAEEERHSLIAF 552
DD TN + SK + VH ++ M + N + +R++ I F
Sbjct: 538 DDFTNENDMSKYKEVHEKQAAIANMVNTFN-KPKRNAFIGF 577
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Frame = +1
Query: 274 RENAEDALHNQSTSKCEKSCRNFDVIDSPLFKDETPTRCRNEMQGSFTDSGHFDDLTNSS 453
R DA HN + CE C ++ +E + G+ SG DL
Sbjct: 282 RNEGIDATHNPEFTSCEAYCAYLNLEGMKKLTEELIRFICLTINGNLQISGQTVDL-EKG 340
Query: 454 LHSKESVHMLTHEVSC-MTDINNAEEERHSLIAFYEK 561
E + L E++ ++ ++N+E R LI+ +++
Sbjct: 341 FEVIEFIPALQKELNVELSPLDNSENCRKQLISIFKR 377
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 508 DINNAEEERHSLIAFYEKKIEDVVRSHVGETQELKKAHNDKVEALLQKLADVNTR 672
D NN E + S + F + +D+++S T E++K D +QKL+D+ R
Sbjct: 1337 DTNN-ESNKVSSVEFDKSGPQDIIQSMTEATFEIEKNIQDLKSEEVQKLSDLLMR 1390
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 27.9 bits (59), Expect = 1.6
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Frame = +1
Query: 454 LHSKESVHMLTHEVSCMTDINNAEEERHSLIAFYEKKIEDVVRSHVG--------ETQEL 609
L++ ++ +LTH ++DI++ EE L E E V R H G +E
Sbjct: 139 LYNLDAEDVLTHGNRPLSDIDSFEEPGFGLDEGEELNDEVVRRMHFGGFEDSDAENEKEG 198
Query: 610 KKAHNDKVEALLQKLADVNTRYCELLPNYEQAKERIHSLEKQLE 741
+ AH K E + + +A E E+ ++ L++Q+E
Sbjct: 199 EGAHKSKREVMSEIIAKSKHYKAERQAEKERYEDEREKLDEQME 242
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/106 (19%), Positives = 39/106 (36%)
Frame = +1
Query: 220 TSICSPDEKSTSSEIVTIRENAEDALHNQSTSKCEKSCRNFDVIDSPLFKDETPTRCRNE 399
T+ S S ++ T + + + + +T + S N + T +R +
Sbjct: 234 TTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSASNSPALSGSSTPSNTSSRSNRQ 293
Query: 400 MQGSFTDSGHFDDLTNSSLHSKESVHMLTHEVSCMTDINNAEEERH 537
G+F++ H+D NS + H H + NN E H
Sbjct: 294 NHGNFSEKRHYDRYGNSHPSYNKYSH-YQHGFNYNNSGNNRNESGH 338
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 433 DDLTNSSLHSKESVHMLTHEVSCMTDINNAEEE 531
DDL+NSS S ESV+ L E +N + E
Sbjct: 1062 DDLSNSSESSNESVYSLVEESDASLAADNMDIE 1094
>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 131
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 520 AEEERHSLIAFYEKKIEDV-VRSHVGETQELKKAHNDKVEALLQKLADVNTRYCELLPNY 696
++E+ L +++ E + +R + E +EL++ + +K E LLQ D++ L
Sbjct: 2 SKEDEEVLESYFWTLQESIPLRRRIREIRELQERNKNKYEQLLQARKDLDRFRSNLNVQQ 61
Query: 697 EQAKERIHSLEKQLE 741
EQ + I ++ ++
Sbjct: 62 EQLQNEILGFKQDVK 76
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 663 NISQFLE*GFYFVIMSFFKFLCFSNMRANNIFNFFLIKC 547
N+ F FYF + SFF FL F+++ FNFF C
Sbjct: 103 NVVPFFCFFFYFSLFSFFSFL-FTSLH----FNFFFRLC 136
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 548 AIKLCLSSSALFISVMQETSCVSI*TDSLECKDEFVRSSKCPESVNEPCISL 393
A+K C + LF+ + + T++ KD F+ S+K P V + ++L
Sbjct: 200 ALKKCDPETTLFLIASKTFTTAETCTNAKSAKDWFLASAKDPSHVAKHFVAL 251
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 418 DSGHFDDLTNSSLHSKESVHMLTHEVSCMTDINNAEEERHS 540
+ H DD+T+ H K++ +LT V + + + +E S
Sbjct: 142 NDAHNDDITHLQFHPKDNELLLTGSVDGLVSLLDTTKEEDS 182
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 6.5
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +1
Query: 493 VSCMTDINNAEEERHS-LIAFYEKKIEDVVRSHVGETQELKKAHNDK--VEALLQKLADV 663
+S NNAE HS + R + K AH+ K V+AL + +
Sbjct: 123 LSLQERFNNAENSGHSNYYPVGPPEWAPYTRLMTQTSLYAKSAHSTKTVVDALYKSYLEK 182
Query: 664 NTRYCELLPNYEQ 702
+ Y ELL NY++
Sbjct: 183 QSDYSELLDNYKK 195
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 577 VRSHVGETQELKKAHNDKVEALLQKLADVNTRYCELLPNYEQAKERIHSLEKQ 735
+RS V ++ K +DK++ + +L + Y E E RI +LEKQ
Sbjct: 411 LRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRIQTLEKQ 463
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 397 EMQGSFTDSGHFDDLTNSSLHSKESVHMLTHEVSCMTDINN 519
+++ + + +G F + S S +H ++ V C D+NN
Sbjct: 34 KLKSNISHTGSFFANLSQSYSSTSIIHSVSSPVDCSLDVNN 74
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 281 MLKMHYIINQLLNVKNL 331
+L +HY+I+QLL+ KNL
Sbjct: 415 VLWLHYLIHQLLHKKNL 431
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.127 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,274
Number of Sequences: 5004
Number of extensions: 61637
Number of successful extensions: 206
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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