Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F18
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   3.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.2  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 18/96 (18%), Positives = 45/96 (46%)
 Frame = +1

Query: 439 LTNSSLHSKESVHMLTHEVSCMTDINNAEEERHSLIAFYEKKIEDVVRSHVGETQELKKA 618
           + + +++SK+++  +  EV C+   N A            K + D V +H+    ++ K+
Sbjct: 18  MLDHTINSKKTIMRILKEV-CVLQANRA--------CILIKDLFDNVHNHIQNIFKIIKS 68

Query: 619 HNDKVEALLQKLADVNTRYCELLPNYEQAKERIHSL 726
            N+K+   + ++  ++ +    L  Y+   + +H L
Sbjct: 69  TNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHIL 104


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 18/96 (18%), Positives = 45/96 (46%)
 Frame = +1

Query: 439 LTNSSLHSKESVHMLTHEVSCMTDINNAEEERHSLIAFYEKKIEDVVRSHVGETQELKKA 618
           + + +++SK+++  +  EV C+   N A            K + D V +H+    ++ K+
Sbjct: 1   MLDHTINSKKTIMRILKEV-CVLQANRA--------CILIKDLFDNVHNHIQNIFKIIKS 51

Query: 619 HNDKVEALLQKLADVNTRYCELLPNYEQAKERIHSL 726
            N+K+   + ++  ++ +    L  Y+   + +H L
Sbjct: 52  TNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHIL 87


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 434 SKCPESVNEPCISLRHL 384
           S+CP  +++ CI +R +
Sbjct: 478 SRCPPEIHKSCICVRFI 494


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 434 SKCPESVNEPCISLRHL 384
           S+CP  +++ CI +R +
Sbjct: 478 SRCPPEIHKSCICVRFI 494


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 675 IPCVNISQFLE*GFYFVIMSFFKF-LCFSNMRANNIFNFFLI 553
           +PCV+IS      FY    S  K  LC + + +  +F F LI
Sbjct: 244 VPCVSISYLSVLAFYLPADSGEKIALCINILLSQTMF-FLLI 284


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 95  RELKSKSVGLKVCLVKQRETWKKK 166
           RE + KS   +    K RETWK++
Sbjct: 43  REREQKSYKNENSYRKYRETWKER 66


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 95  RELKSKSVGLKVCLVKQRETWKKK 166
           RE + KS   +    K RETWK++
Sbjct: 43  REREQKSYKNENSYRKYRETWKER 66


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 95  RELKSKSVGLKVCLVKQRETWKKK 166
           RE + KS   +    K RETWK++
Sbjct: 43  REREQKSYKNENSYRKYRETWKER 66


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 95  RELKSKSVGLKVCLVKQRETWKKK 166
           RE + KS   +    K RETWK++
Sbjct: 43  REREQKSYKNENSYRKYRETWKER 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.127    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,026
Number of Sequences: 438
Number of extensions: 4102
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)