Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_F16
(755 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 257 2e-67
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 252 9e-66
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 238 9e-62
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 235 1e-60
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 231 2e-59
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 229 6e-59
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 223 4e-57
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 223 5e-57
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 220 3e-56
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 219 6e-56
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 211 1e-53
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 203 4e-51
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 202 7e-51
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 202 1e-50
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 200 3e-50
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 200 4e-50
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 195 9e-49
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 189 7e-47
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 186 5e-46
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 181 2e-44
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 181 2e-44
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 179 8e-44
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 176 4e-43
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 172 7e-42
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 172 9e-42
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 169 6e-41
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 166 6e-40
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 160 3e-38
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 159 9e-38
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 156 5e-37
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 151 1e-35
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 151 2e-35
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 150 4e-35
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 148 2e-34
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 129 6e-29
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 128 1e-28
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 124 2e-27
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 123 4e-27
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 120 3e-26
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 116 8e-25
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 115 1e-24
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 115 1e-24
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 112 8e-24
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 112 1e-23
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 111 2e-23
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 110 3e-23
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 107 2e-22
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 107 2e-22
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 106 5e-22
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 106 7e-22
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 105 9e-22
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 103 4e-21
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 99 1e-19
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 98 2e-19
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 98 2e-19
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 98 2e-19
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 97 4e-19
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 96 1e-18
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 93 5e-18
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 93 7e-18
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 92 2e-17
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 91 3e-17
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 90 5e-17
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 90 5e-17
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 90 6e-17
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 90 6e-17
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 89 8e-17
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 89 1e-16
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 89 1e-16
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 88 3e-16
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 87 4e-16
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 87 4e-16
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 85 2e-15
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 84 3e-15
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 83 7e-15
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 81 2e-14
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 81 4e-14
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 81 4e-14
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 79 1e-13
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 79 1e-13
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 79 1e-13
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 77 6e-13
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 76 1e-12
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 75 1e-12
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 74 4e-12
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 73 6e-12
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 73 6e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 72 1e-11
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 71 3e-11
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 69 1e-10
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 66 7e-10
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 65 2e-09
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 61 3e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 60 8e-08
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 59 1e-07
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 57 4e-07
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 47 6e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 44 0.005
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 40 0.050
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 40 0.050
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 37 0.47
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 37 0.62
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 37 0.62
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu... 35 2.5
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 34 4.4
UniRef50_Q0FZJ0 Cluster: Cell wall surface anchor family protein... 33 7.6
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 257 bits (629), Expect = 2e-67
Identities = 132/210 (62%), Positives = 141/210 (67%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFPR+
Sbjct: 11 RTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRM 70
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ F IVENGAGTG TVYPPLSSN+AH G SVDLAIFSLHLAGISS
Sbjct: 71 NNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISS 130
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
SFDQ+PLF+ AVGITA AGAIT+LLTDRNLNT
Sbjct: 131 ILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNT 190
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILI 734
SFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 191 SFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 252 bits (616), Expect = 9e-66
Identities = 130/206 (63%), Positives = 139/206 (67%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAELG PGSLIGDDQIYNTIVTAHA N LVPL+LGAPD+AFPR+
Sbjct: 35 RAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRM 94
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ F IVENGAGTG TVYPPLSSN+AH G SVDLAIFSLHLAGISS
Sbjct: 95 NNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISS 154
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
SFDQ+PLFV AVGITAF AGAIT+LLTDRNLNT
Sbjct: 155 ILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSLPVLAGAITMLLTDRNLNT 214
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEV 722
SFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 215 SFFDPAGGGDPILYQHLFWFFGHPKL 240
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2
Query: 2 RK*IYSTNHKDIGTLYFIFG 61
RK +YSTNHKDIGTLYFIFG
Sbjct: 1 RKWLYSTNHKDIGTLYFIFG 20
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 238 bits (583), Expect = 9e-62
Identities = 126/217 (58%), Positives = 139/217 (64%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAELG PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 39 RAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 98
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE GAGTG TVYPPL+ N+AH G SVDLAIFSLHLAGISS
Sbjct: 99 NNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGISS 158
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S Q PLFV +V ITA A IT+LLTDRNLNT
Sbjct: 159 ILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNT 218
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+FFDPAGGGDPILYQHLF FFGHPEVYILI PGFG+I
Sbjct: 219 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMI 255
Score = 36.7 bits (81), Expect = 0.62
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFG 61
++STNHKDIGTLY IFG
Sbjct: 8 LFSTNHKDIGTLYLIFG 24
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 235 bits (574), Expect = 1e-60
Identities = 123/217 (56%), Positives = 136/217 (62%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAEL PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSS 157
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S Q PLFV AV +TA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+FFDPAGGGDPILYQHLF FFGHPEVYILI PGFGII
Sbjct: 218 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGII 254
Score = 35.5 bits (78), Expect = 1.4
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 14 YSTNHKDIGTLYFIFG 61
+STNHKDIGTLY +FG
Sbjct: 8 FSTNHKDIGTLYLVFG 23
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 231 bits (564), Expect = 2e-59
Identities = 120/217 (55%), Positives = 136/217 (62%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAEL PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSS 157
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ Q PLFV +V +TA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+FFDPAGGGDPILYQHLF FFGHPEVYILI PGFG+I
Sbjct: 218 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMI 254
Score = 35.5 bits (78), Expect = 1.4
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 14 YSTNHKDIGTLYFIFG 61
+STNHKDIGTLY +FG
Sbjct: 8 FSTNHKDIGTLYLVFG 23
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 229 bits (560), Expect = 6e-59
Identities = 119/217 (54%), Positives = 136/217 (62%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAELG PG+L+G+D IYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ F +VE GAGTG TVYPPL+ N +H G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSS 157
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ Q PLFV +V ITA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+FFDPAGGGDPILYQHLF FFGHPEVYILI PGFG+I
Sbjct: 218 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMI 254
Score = 35.9 bits (79), Expect = 1.1
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFG 61
++STNHKDIGTLY +FG
Sbjct: 7 LFSTNHKDIGTLYLLFG 23
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 223 bits (545), Expect = 4e-57
Identities = 122/216 (56%), Positives = 141/216 (65%)
Frame = -2
Query: 697 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 518
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 517 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCATLDESGG*TVHPVPAPFSTIL 338
+R I+E PAKC+EKI STD P CA SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 337 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIV 158
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 157 L*I*SSPINDPGFPNSARIKXLKDVPIIPDQIPKNK 50
L I S PI PG PNSARIK L DVP +P PK K
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPKMK 214
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 223 bits (544), Expect = 5e-57
Identities = 115/217 (52%), Positives = 134/217 (61%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FPR+
Sbjct: 22 RLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRM 81
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 82 NNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASS 141
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ D++ LF +V ITA AGAIT+LLTDRN+NT
Sbjct: 142 IMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNT 201
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
SFFDP+GGGDPILYQHLF FFGHPEVYILI PGFGII
Sbjct: 202 SFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGII 238
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 220 bits (538), Expect = 3e-56
Identities = 116/219 (52%), Positives = 133/219 (60%), Gaps = 2/219 (0%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
R+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GI
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGI 155
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV A+ +TA AGAIT+LLTDRN
Sbjct: 156 SSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNF 215
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
NTSF+DPAGGGDPILYQHLF FFGHPEVYILI PGFG++
Sbjct: 216 NTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGMV 254
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 219 bits (535), Expect = 6e-56
Identities = 113/219 (51%), Positives = 134/219 (61%), Gaps = 2/219 (0%)
Frame = +3
Query: 105 RAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG I G+ Q+YN ++TAHA N VP+++GAPD+AFP
Sbjct: 39 RMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFP 98
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
R+NNI F +VE G+GTG TVYPPLS +H G +VDLAIFSLHL+G+
Sbjct: 99 RLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSGV 158
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV +V +TAF AGAIT+LLTDRN
Sbjct: 159 SSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTDRNF 218
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
NT+FFDPAGGGDPILYQHLF FFGHPEVYILI PGFGII
Sbjct: 219 NTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGII 257
Score = 39.1 bits (87), Expect = 0.12
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFG 61
++STNHKDIGTLYFIFG
Sbjct: 8 LFSTNHKDIGTLYFIFG 24
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 211 bits (516), Expect = 1e-53
Identities = 110/219 (50%), Positives = 134/219 (61%), Gaps = 2/219 (0%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL P + L+G+ QIYN ++TAHA N LVP+++G+PD+AFP
Sbjct: 44 RMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAFP 103
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
R+NNI F +VE G GTG TVYPPLSS +H G +VDLAIFSLH++G
Sbjct: 104 RLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSLHISGA 163
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS S ++PLFV ++ +TAF AGAIT+LLTDRN
Sbjct: 164 SSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVPVLAGAITMLLTDRNF 223
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
NTSFFD +GGGDPILYQHLF FFGHPEVYILI PGFG+I
Sbjct: 224 NTSFFDASGGGDPILYQHLFWFFGHPEVYILILPGFGMI 262
Score = 37.5 bits (83), Expect = 0.35
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFG 61
I+STNHKDIGTLY IFG
Sbjct: 13 IFSTNHKDIGTLYLIFG 29
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 203 bits (495), Expect = 4e-51
Identities = 106/198 (53%), Positives = 119/198 (60%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFPR+
Sbjct: 21 RVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRL 80
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 81 NNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSS 140
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ + LFV +V ITA AGAIT+LLTDRN NT
Sbjct: 141 ILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNT 200
Query: 645 SFFDPAGGGDPILYQHLF 698
SFFDPAGGGDPILYQHLF
Sbjct: 201 SFFDPAGGGDPILYQHLF 218
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 202 bits (493), Expect = 7e-51
Identities = 109/218 (50%), Positives = 125/218 (57%), Gaps = 1/218 (0%)
Frame = +3
Query: 105 RAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R EL PG I D+Q+YN+I+TAHA N L+PL LG PD+ FPR
Sbjct: 38 RLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGPDMGFPR 97
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGIS 461
+NNI + +ENG GTG T+YPPLS +H G SVDLAIF LHL+GIS
Sbjct: 98 LNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGLHLSGIS 157
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S +L LF AV ITA AG IT++LTDRN N
Sbjct: 158 SLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVLAGGITMVLTDRNFN 217
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
TSFF+ AGGGDPILYQHLF FFGHPEVYILI PGFGII
Sbjct: 218 TSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPGFGII 255
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 202 bits (492), Expect = 1e-50
Identities = 109/219 (49%), Positives = 128/219 (58%), Gaps = 2/219 (0%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PGS L G+ Q++N +V HA N L+PL++GA D AFP
Sbjct: 37 RLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFP 96
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
RINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL I
Sbjct: 97 RINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSI 156
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV ++ ITAF + IT+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNF 216
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
NTSFF+ +GGGDPILY+HLF FFGHPEVYILI PGFGII
Sbjct: 217 NTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGII 255
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 200 bits (488), Expect = 3e-50
Identities = 104/202 (51%), Positives = 122/202 (60%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL +PGS++GDD +YN IVTAHA N VPL++GAPD+AFPR+
Sbjct: 39 RLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRL 98
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NNI F +VE GAGTG TVYPPL+S AH G SVD+AIFSLHLAG+SS
Sbjct: 99 NNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSS 158
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ ++PLFV +V ITA AGAIT+LLTDR NT
Sbjct: 159 ILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPVLAGAITMLLTDRYFNT 218
Query: 645 SFFDPAGGGDPILYQHLF*FFG 710
+FFDPAGGGDPILYQHLF FFG
Sbjct: 219 TFFDPAGGGDPILYQHLFWFFG 240
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 200 bits (487), Expect = 4e-50
Identities = 107/219 (48%), Positives = 127/219 (57%), Gaps = 2/219 (0%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PGS L G+ Q++N +V HA N ++PL++GA D++FP
Sbjct: 37 RMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFP 96
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
RIN+I F +VE+GAGTG TVYPPLSS AH G SVDLAIFSLHL I
Sbjct: 97 RINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTSI 156
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS S ++PLFV A+ ITAF + IT+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPVLSAGITMLLMDRNF 216
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
NTSFF+ AGGGDPI YQH F FFGHPEVYILI PGFGI+
Sbjct: 217 NTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPGFGIV 255
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 195 bits (476), Expect = 9e-49
Identities = 103/218 (47%), Positives = 124/218 (56%), Gaps = 1/218 (0%)
Frame = +3
Query: 105 RAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R EL PG I D+Q+YN+I+T+H N L+P+++G PD+AFPR
Sbjct: 64 RLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGPDMAFPR 123
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGIS 461
+NN+ + I+ENG GTG T+YPPLS +H VDL IF LHL+GIS
Sbjct: 124 LNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHLSGIS 183
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S +L LF AV ITA A AIT+LLTDRNLN
Sbjct: 184 SLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLPVLAAAITMLLTDRNLN 243
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
TSF++ AGGGD ILYQHLF FFGHPEVYILI PGFGII
Sbjct: 244 TSFYELAGGGDAILYQHLFWFFGHPEVYILIIPGFGII 281
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 189 bits (460), Expect = 7e-47
Identities = 100/219 (45%), Positives = 116/219 (52%), Gaps = 2/219 (0%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L G+ YN I T H N VP+++GAPD++FP
Sbjct: 40 RLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAPDMSFP 99
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
R+NN F E G GTG TVYPPLSS +H G SVDL IFS HL GI
Sbjct: 100 RLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVGI 159
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
S LPLFV +V +T+F A AIT+LL DRN
Sbjct: 160 GSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVAIPVLAAAITLLLFDRNF 219
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
NTSF+DP GGGD +LYQHLF FFGHPEVYILI PGFG++
Sbjct: 220 NTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPGFGLV 258
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 186 bits (453), Expect = 5e-46
Identities = 101/200 (50%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
R+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GI
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGI 155
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV A+ +TA AGAIT+LLTDRN
Sbjct: 156 SSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNF 215
Query: 639 NTSFFDPAGGGDPILYQHLF 698
NTSF+DPAGGGDPILYQHLF
Sbjct: 216 NTSFYDPAGGGDPILYQHLF 235
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 181 bits (440), Expect = 2e-44
Identities = 90/212 (42%), Positives = 122/212 (57%)
Frame = +3
Query: 120 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+GGGDP+LY+H+F FFGHPEVYILI P FG++
Sbjct: 241 SGGGDPLLYEHIFWFFGHPEVYILIVPVFGVV 272
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 181 bits (440), Expect = 2e-44
Identities = 90/212 (42%), Positives = 122/212 (57%)
Frame = +3
Query: 120 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+GGGDP+LY+H+F FFGHPEVYILI P FG++
Sbjct: 241 SGGGDPLLYEHIFWFFGHPEVYILIVPVFGVV 272
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 179 bits (435), Expect = 8e-44
Identities = 100/222 (45%), Positives = 122/222 (54%), Gaps = 5/222 (2%)
Frame = +3
Query: 105 RAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R EL PG I ++Q+YN+I+TAHA N L+PL++G PD+AFPR
Sbjct: 66 RLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGPDMAFPR 125
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNVAHRGRSVDLAIFSLHL 449
+NNI F I+E G GTG T+ YPPLS +H G SVDLAIF+LHL
Sbjct: 126 LNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLAIFALHL 185
Query: 450 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 629
+G+SS +L LF + IT++LTD
Sbjct: 186 SGVSSLLGSINFITTVANMRTPGIKLHKLALF-------GWATWSSRSRYFLGITMVLTD 238
Query: 630 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
RN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI PGFGII
Sbjct: 239 RNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFGII 280
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 176 bits (429), Expect = 4e-43
Identities = 88/219 (40%), Positives = 122/219 (55%), Gaps = 2/219 (0%)
Frame = +3
Query: 105 RAELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
+A LG L G D ++N ++T H N +PL++GAPD+AFP
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
R+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G
Sbjct: 202 RLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGA 261
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 262 SSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNF 321
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
T+FFDPAGGGDPIL+QH+F FFGHPEVYI+I P FG+I
Sbjct: 322 GTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVI 360
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 172 bits (419), Expect = 7e-42
Identities = 96/212 (45%), Positives = 117/212 (55%), Gaps = 2/212 (0%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PGS L G+ Q++N +V HA N L+PL++GA D AFP
Sbjct: 37 RLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFP 96
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
RINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL I
Sbjct: 97 RINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSI 156
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV ++ ITAF + IT+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNF 216
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 734
NTSFF+ +GGGDPILY+HLF FFG I++
Sbjct: 217 NTSFFEVSGGGDPILYEHLFWFFGQTVATIIM 248
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 172 bits (418), Expect = 9e-42
Identities = 93/206 (45%), Positives = 116/206 (56%), Gaps = 4/206 (1%)
Frame = +3
Query: 150 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
++N ++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 93 LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152
Query: 330 XXXXIVE----NGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 497
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211
Query: 498 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 677
+ ++PLFV +V +TAF A AIT+LLTDRN T+F+D AGGGDP
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDP 271
Query: 678 ILYQHLF*FFGHPEVYILIXPGFGII 755
LYQHLF FFGHPEVYI+I PGFGII
Sbjct: 272 ELYQHLFWFFGHPEVYIMILPGFGII 297
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 169 bits (411), Expect = 6e-41
Identities = 93/185 (50%), Positives = 106/185 (57%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAEL PG+L+GDDQIYN IVTAHA N L+PL++GAPD+AFPR+
Sbjct: 27 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRM 86
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ F +E GAGTG TVYPPL+ N+AH G SVDL IFSLHLAGISS
Sbjct: 87 NNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISS 146
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S Q PLFV AV ITA A IT+LLTDRNLNT
Sbjct: 147 ILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNT 206
Query: 645 SFFDP 659
+FFDP
Sbjct: 207 TFFDP 211
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 166 bits (403), Expect = 6e-40
Identities = 91/204 (44%), Positives = 113/204 (55%), Gaps = 2/204 (0%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L G++Q++N +V HA N ++PL++GA D AFP
Sbjct: 37 RLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGATDTAFP 96
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
RINNI F +VE+GAGTG TVYPPL+S AH G SVDLAIF+LH+ I
Sbjct: 97 RINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHMTSI 156
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV A+ ITA + +T+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPVLSAGVTMLLLDRNF 216
Query: 639 NTSFFDPAGGGDPILYQHLF*FFG 710
NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 217 NTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 160 bits (389), Expect = 3e-38
Identities = 86/156 (55%), Positives = 96/156 (61%)
Frame = +3
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVD 425
L LGAPD FPR N+ F VE GAGTG TV PPLS+N+AH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 426 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 605
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 606 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 713
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 159 bits (385), Expect = 9e-38
Identities = 89/211 (42%), Positives = 113/211 (53%), Gaps = 2/211 (0%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL N GS L G+ Q +N ++TAHA N L+PL+LGA D+AF
Sbjct: 42 RLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFA 101
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
R+NNI F +VE GAGTG TVY PL+ +H G +VDLAIFSLHL+G
Sbjct: 102 RLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGF 161
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS ++ +PLF AV TA A +T+ + DRN
Sbjct: 162 SSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSLPVLAAGLTMGIFDRNF 221
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 731
NTSFF+ AGGGD +LYQHLF ++ HPEV I+
Sbjct: 222 NTSFFEYAGGGDAVLYQHLFYWWNHPEVKII 252
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 156 bits (379), Expect = 5e-37
Identities = 82/207 (39%), Positives = 114/207 (55%), Gaps = 2/207 (0%)
Frame = +3
Query: 120 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPILYQHLF*FFGH--PEVYILI 734
+GGGDP+LY+H+F FFG P + I+I
Sbjct: 241 SGGGDPLLYEHIFWFFGQIWPIIIIII 267
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 151 bits (367), Expect = 1e-35
Identities = 81/219 (36%), Positives = 108/219 (49%), Gaps = 2/219 (0%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL +PG G Q+YN+++T H N ++PL+LGAP++AFP
Sbjct: 47 RFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAPEMAFP 106
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
R+N + F + G G+ T YPPLS S+D I LH GI
Sbjct: 107 RVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGLHTVGI 165
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
S + DQ+ +FV +T+F AG++ LL DRN
Sbjct: 166 GSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFLLLDRNF 225
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
NTSF+D GG+P+LYQHLF FFGHPEVY++I P FGII
Sbjct: 226 NTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPVFGII 264
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 151 bits (366), Expect = 2e-35
Identities = 79/210 (37%), Positives = 104/210 (49%)
Frame = +3
Query: 126 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 305
G L GD Q YN ++T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107
Query: 306 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISSXXXXXXX 485
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167
Query: 486 XXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG 665
SF LF+ A ITA AG +T++L DRN NTSF+D G
Sbjct: 168 LGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVG 227
Query: 666 GGDPILYQHLF*FFGHPEVYILIXPGFGII 755
GGD IL+QH+F FFGHPEVYI++ P FG+I
Sbjct: 228 GGDLILFQHIFWFFGHPEVYIILLPVFGLI 257
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 150 bits (363), Expect = 4e-35
Identities = 83/211 (39%), Positives = 115/211 (54%)
Frame = +3
Query: 120 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPILYQHLF*FFGHPEVYILIXPGFGI 752
+GGGDP+LY+H+ F+ +P V ILI GI
Sbjct: 241 SGGGDPLLYEHI--FYKNP-VLILIWLTSGI 268
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 148 bits (358), Expect = 2e-34
Identities = 79/218 (36%), Positives = 111/218 (50%), Gaps = 1/218 (0%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL +PG + +Y++I+T HA N +PL++ D++ PR+
Sbjct: 40 RIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPRL 99
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ + G G G T+YPPLS++ G +DLA+FSLH+AG+SS
Sbjct: 100 NNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMSS 159
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
F L P+ + + T+ A +T+LL DR+ +
Sbjct: 160 IAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSVPVLAAGLTLLLLDRHFS 219
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
TSF+ P GGGDPIL+QHLF FFGHPEVYILI P FG+I
Sbjct: 220 TSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGVI 257
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 129 bits (312), Expect = 6e-29
Identities = 71/203 (34%), Positives = 100/203 (49%), Gaps = 1/203 (0%)
Frame = +3
Query: 150 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
+YN I T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 330 XXXXIVENGAGTG*TVYPPLSSNVAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXX 506
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHL 177
Query: 507 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 686
+ L + ++ IT+ G + +LL+D + NT FFDP GDPILY
Sbjct: 178 RAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILY 237
Query: 687 QHLF*FFGHPEVYILIXPGFGII 755
QHLF FFGHPEVYILI P FG+I
Sbjct: 238 QHLFWFFGHPEVYILILPAFGVI 260
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 128 bits (309), Expect = 1e-28
Identities = 68/203 (33%), Positives = 98/203 (48%)
Frame = +3
Query: 147 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
+IYN + T H N L P++LG D+ +PR+N
Sbjct: 60 EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119
Query: 327 XXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 506
+E G+GTG T+YPPLS+++++ G +D IF L AGI+S
Sbjct: 120 VVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSV 177
Query: 507 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 686
D++ ++ +T+F ++ DR+ NT FF+ + GDP+LY
Sbjct: 178 KTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLY 237
Query: 687 QHLF*FFGHPEVYILIXPGFGII 755
QHLF FFGHPEVYI+I PGFGII
Sbjct: 238 QHLFWFFGHPEVYIMILPGFGII 260
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 124 bits (299), Expect = 2e-27
Identities = 73/169 (43%), Positives = 86/169 (50%), Gaps = 2/169 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
R+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GI
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGI 155
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 605
SS + +LPLFV A+ +TA AG
Sbjct: 156 SSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAG 204
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 123 bits (297), Expect = 4e-27
Identities = 78/217 (35%), Positives = 100/217 (46%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R L +P + +YN +VT H N +P+ L D+ PR+
Sbjct: 136 RLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFGNYFLPIFLCLDDLLLPRL 195
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
N++ G G G T+YPPLS G VD +FSLHLAG+SS
Sbjct: 196 NSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSIWEGS-GFGVDYLMFSLHLAGVSS 252
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S + V A T+ A IT+LL DRN T
Sbjct: 253 LIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSLPVLASGITMLLFDRNFGT 307
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+FF+P+GGGDPIL+QHLF FFGHPEVY+LI PGFGI+
Sbjct: 308 AFFEPSGGGDPILFQHLFWFFGHPEVYVLILPGFGIV 344
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 120 bits (290), Expect = 3e-26
Identities = 75/216 (34%), Positives = 102/216 (47%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P L D +YN VT H N L+P PD+ FPR+
Sbjct: 35 RLQLAFPSILTSD--VYNAFVTLHGLVMVFFAAMPTAIGFFANLLIPYHCNLPDLLFPRM 92
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
N + F ++ + A G T YPPLSS SV+ ++FSLHLAGI+S
Sbjct: 93 NALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIAS 143
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ L LF ++ + + A IT++LTD++L T
Sbjct: 144 LISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSLPVLAVGITLILTDKHLGT 201
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGI 752
F+D GGDP+LYQHLF FFGHPEVY++I P FG+
Sbjct: 202 CFYDATMGGDPLLYQHLFWFFGHPEVYVVILPVFGL 237
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 116 bits (278), Expect = 8e-25
Identities = 69/207 (33%), Positives = 92/207 (44%), Gaps = 6/207 (2%)
Frame = +3
Query: 153 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 332
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 333 XXXIVENG-AGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 509
G AG G T Y PLS+NV G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 510 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGD 674
++ +LPL + + +TA A +LL DR+ T FF GGGD
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGD 265
Query: 675 PILYQHLF*FFGHPEVYILIXPGFGII 755
PIL+QHLF FGHPEVYI+I P +GI+
Sbjct: 266 PILWQHLFWIFGHPEVYIMILPAWGIL 292
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 115 bits (276), Expect = 1e-24
Identities = 69/217 (31%), Positives = 95/217 (43%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + +++N + T H N VPL++GA D+AFPR+
Sbjct: 58 RIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIGARDVAFPRL 116
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
N+ F + + G Y PLSS + VD I L + GI S
Sbjct: 117 NSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWIIGLLIMGIGS 176
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S ++PLFV + + A A+ +LL DR L +
Sbjct: 177 VSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAMLLIDRWLGS 236
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+FFDP GG +L+QH F FGHPEVYILI PGFG+I
Sbjct: 237 AFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGMI 273
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 115 bits (276), Expect = 1e-24
Identities = 81/225 (36%), Positives = 106/225 (47%), Gaps = 8/225 (3%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL +PG + + YN+++T+H N L+PL++GA D+AFPRI
Sbjct: 120 RIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAFPRI 178
Query: 285 NNIRFXXX--XXXXXXXXXXXIVEN-GAGTG*TVYPPLS-----SNVAHRGRSVDLAIFS 440
N I F I E A TG T+Y PLS N A+ G VDL +
Sbjct: 179 NAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMGNQANAG--VDLMLLG 236
Query: 441 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 620
LHL+G+S+ S+ L +F + + AI +L
Sbjct: 237 LHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGLILFAFPLLGSAIMML 296
Query: 621 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
L DRN TSFF AG G IL+QHLF FFGHPEVYI++ P GII
Sbjct: 297 LFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGII 339
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 112 bits (270), Expect = 8e-24
Identities = 66/209 (31%), Positives = 95/209 (45%)
Frame = +3
Query: 123 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 302
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 303 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISSXXXXXX 482
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 483 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 662
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 663 GGGDPILYQHLF*FFGHPEVYILIXPGFG 749
GGDP++YQ++F F+ HP VY+ + P FG
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLPVFG 208
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 112 bits (269), Expect = 1e-23
Identities = 72/217 (33%), Positives = 94/217 (43%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL P ++YN ++T H N L+PL++G D+AFPR+
Sbjct: 53 RTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPRL 111
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
N + F V G T YPPLS G +L I SL L G SS
Sbjct: 112 NAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWILSLLLVGTSS 168
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+PLF A+ T+ A A+ +L D T
Sbjct: 169 ILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALILLSFDLIAGT 228
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
SFF+P GGGDP++YQHLF F+ HP VYI+I P FG+I
Sbjct: 229 SFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPFFGVI 265
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 111 bits (267), Expect = 2e-23
Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 2/203 (0%)
Frame = +3
Query: 150 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
IYN +T H N L+P+++G +++ PR+N I F
Sbjct: 63 IYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIF 122
Query: 330 XXXXIV-ENGAGTG*TVYPPLSSNVAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 503
++ +G T+YPPLS+ A G ++DL++ +H+ GISS
Sbjct: 123 VISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKY 182
Query: 504 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 683
+F + ++ ++ +T+ AIT LL DRN+N++ +D G DP+L
Sbjct: 183 NRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVL 240
Query: 684 YQHLF*FFGHPEVYILIXPGFGI 752
YQHLF FFGHPEVY++I P FG+
Sbjct: 241 YQHLFWFFGHPEVYVIILPVFGL 263
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 110 bits (265), Expect = 3e-23
Identities = 70/218 (32%), Positives = 97/218 (44%), Gaps = 1/218 (0%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL PG I D YN T H N ++PL+LGA D+AFPR+
Sbjct: 68 RVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAFPRL 127
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
N + ++ G TG T Y P S AH +V +F + G SS
Sbjct: 128 NLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AHTTTTVAPVLFGAFIIGFSS 183
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL-N 641
++ ++PLFV A+ T+ G + +L+T NL
Sbjct: 184 IVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATSCIQVLATPVI-GLLLVLVTVENLFG 242
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
FDPA GGDP+L+QHLF F+ HP VYI++ P FG++
Sbjct: 243 FGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLPSFGVM 280
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 107 bits (258), Expect = 2e-22
Identities = 69/218 (31%), Positives = 96/218 (44%), Gaps = 1/218 (0%)
Frame = +3
Query: 105 RAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R +L P + IG D+ YN I T H LVPL++G IAFPR
Sbjct: 55 RLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVGTRHIAFPR 112
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGIS 461
+N + V+ G G Y PLS G+ D+ + +S
Sbjct: 113 LNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQMITFTEVS 172
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
+ S D++PLFV ++ +T+F A T L+ DR +
Sbjct: 173 ALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLILDRLVG 232
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
T FF+PA GGD +L+QHLF FFGHPEVYI+ P G++
Sbjct: 233 THFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGMV 270
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 107 bits (258), Expect = 2e-22
Identities = 68/219 (31%), Positives = 95/219 (43%), Gaps = 3/219 (1%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL P + + D +YN + T H N L+P ++GAPD+AFP++
Sbjct: 62 RGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKL 120
Query: 285 NNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNVAHRGRSVDLAIFSLHLAG 455
N F G A +G YPP+S + + H L I ++ L+G
Sbjct: 121 NAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILAVALSG 180
Query: 456 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 635
ISS F ++P+FV G +LL D +
Sbjct: 181 ISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTGGAVMLLFDLS 240
Query: 636 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGI 752
TSFF P GGGDP+L+QH F F+ HP VY+L+ P FGI
Sbjct: 241 FGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGI 279
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 106 bits (255), Expect = 5e-22
Identities = 69/217 (31%), Positives = 91/217 (41%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +LG P + +YN + T H N +VPL++GA D+AFPR+
Sbjct: 57 RIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMIGARDMAFPRL 115
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
N + V G Y PL+ VD I + L G++S
Sbjct: 116 NALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWIVGIGLTGVAS 175
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ +++PLFV + AF A LL DR+ T
Sbjct: 176 IAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATIQLLFDRHFGT 235
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
FF P GGD +L+QHLF FFGHPEVYILI P GII
Sbjct: 236 RFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGII 272
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 106 bits (254), Expect = 7e-22
Identities = 64/217 (29%), Positives = 93/217 (42%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL PG I D YN + T H N L+P+++GA D+AFP++
Sbjct: 61 RLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAFPKL 120
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
N + F +V+ GA TG T Y P S+ + V L F L G SS
Sbjct: 121 NLLSFYVYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAFIL---GFSS 176
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ +LPLFV ++ T+ ++ ++ +
Sbjct: 177 ILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHAFGW 236
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
FDPA GGDP+L+QH F F+ HP VYI++ P +I
Sbjct: 237 GIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAMAVI 273
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 105 bits (253), Expect = 9e-22
Identities = 67/219 (30%), Positives = 97/219 (44%), Gaps = 2/219 (0%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL + +YN ++T+H N +PL++ A D+AFPRI
Sbjct: 94 RTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAFPRI 152
Query: 285 NNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGI 458
N I F ++ A T T+Y PLS ++ +VD+ + LHL G+
Sbjct: 153 NAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHLTGV 210
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
S+ + L +F + + A+ +LL DRN
Sbjct: 211 SATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLDRNF 270
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
T+FF AGG DPI +QHLF FFGHPEVY+L+ P GI+
Sbjct: 271 GTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLPPMGIV 308
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 103 bits (248), Expect = 4e-21
Identities = 66/218 (30%), Positives = 93/218 (42%), Gaps = 1/218 (0%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAEL PG ++ +N + T H N ++PL +GAPD+AFPR+
Sbjct: 64 RAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIGAPDVAFPRL 122
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNVAHRGRSVDLAIFSLHLAGIS 461
N F + GA G T+Y PLS + G D+ I + GI
Sbjct: 123 NAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWIVGVGATGIG 182
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S + ++P+F + + + A +L DR L
Sbjct: 183 SVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAALGVLYDRKLG 242
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+DPA GG +L+QHLF FFGHPEVY+L P FGI+
Sbjct: 243 GHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIV 279
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 98.7 bits (235), Expect = 1e-19
Identities = 63/216 (29%), Positives = 88/216 (40%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA+L P + D YN I T H N +VPL +GA D+AFP +
Sbjct: 79 RAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAFPYL 137
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ F ++ G T Y PL+SN G + + L +AGI +
Sbjct: 138 NNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAGIGT 197
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ ++P+F IT A+ +L DR
Sbjct: 198 LMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRLFGA 257
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGI 752
FF GG P+L+ +LF +GHPEVYI+I P FGI
Sbjct: 258 HFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGI 293
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 98.3 bits (234), Expect = 2e-19
Identities = 60/181 (33%), Positives = 85/181 (46%), Gaps = 6/181 (3%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNVAH 407
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 588 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILIXPGFGI 752
A +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+ P G+
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGL 263
Query: 753 I 755
+
Sbjct: 264 V 264
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 98.3 bits (234), Expect = 2e-19
Identities = 66/217 (30%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P S Y VT H N +VPL +GA D+AFPR+
Sbjct: 47 RVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQIGARDLAFPRL 105
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGIS 461
N + + E+GA G T+Y PL++ + G +DLA ++ L +S
Sbjct: 106 NALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLAALAIFLFSLS 165
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
+ ++P+F ++ T +LL DRNL
Sbjct: 166 VTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGGALLLLDRNLG 225
Query: 642 TSFF-DPAGGGDPILYQHLF*FFGHPEVYILIXPGFG 749
T FF +PAGG +L+ HLF FFGHPEVYIL+ P G
Sbjct: 226 TEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALG 260
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 97.9 bits (233), Expect = 2e-19
Identities = 60/218 (27%), Positives = 91/218 (41%), Gaps = 1/218 (0%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + + YN I+T H N +VPL+LGA D+A PR+
Sbjct: 50 RTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVALPRV 109
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGIS 461
N + GA G T Y P S A VD + ++ L G S
Sbjct: 110 NAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILLLGFS 166
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S S ++P++V +V + A ++L +R +
Sbjct: 167 SLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLERKIG 226
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
S+F+PA GGDP+L+Q F F+ HP VY+++ P GI+
Sbjct: 227 LSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGIL 264
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 97.1 bits (231), Expect = 4e-19
Identities = 57/216 (26%), Positives = 92/216 (42%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + Q YN ++T H N +VPL +GA D++FP +
Sbjct: 50 RIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQIGARDVSFPFL 108
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
N + F + G T Y LS + +G +D + L ++G+ +
Sbjct: 109 NALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLSLH--SKGHGIDFFVLGLQISGLGT 166
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
++ +LPLF + + + +++ DR T
Sbjct: 167 LIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLALMMLDRLFGT 226
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGI 752
+FF+P GG+ ++++HLF FGHPEVYILI P FGI
Sbjct: 227 NFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGI 262
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 95.9 bits (228), Expect = 1e-18
Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 15/218 (6%)
Frame = +3
Query: 147 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 327 XXXXXIVE-NGAGTG*TVYPPLS---SNVAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 494
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 495 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----- 659
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVV 265
Query: 660 ------AGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
AGGG P+L+QHLF F+ HP VYI+I P G++
Sbjct: 266 NNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMV 303
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 93.5 bits (222), Expect = 5e-18
Identities = 50/96 (52%), Positives = 58/96 (60%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAELG PG+L+GDDQ N IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 39 RAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPDMAFPRM 98
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 392
NN+ F VE GAGTG TVYPPL+
Sbjct: 99 NNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 93.1 bits (221), Expect = 7e-18
Identities = 71/232 (30%), Positives = 96/232 (41%), Gaps = 15/232 (6%)
Frame = +3
Query: 105 RAELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R +LG PG+ D Y +T H N L+PL++GA D+ FP
Sbjct: 64 RLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPY 123
Query: 282 INNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNVAHRGRSVDLAIFSLHLA 452
+N + + V G G G T+YPP + S + + L + SL L
Sbjct: 124 VNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLSSLILF 183
Query: 453 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAITILLTD 629
I + +LPL V + T G++ +LL D
Sbjct: 184 IIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVMLLL-D 242
Query: 630 RNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
R L TSFF P GGG P+L+QHLF FFGHPEVYI+ P FGI+
Sbjct: 243 RLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPAFGIV 294
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 91.9 bits (218), Expect = 2e-17
Identities = 62/219 (28%), Positives = 92/219 (42%), Gaps = 2/219 (0%)
Frame = +3
Query: 105 RAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R EL G I DD +YNT + H N +PL++GA D+AFPR
Sbjct: 40 RLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKDVAFPR 99
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGIS 461
+N + + + T YPP S + H + FS+ L G +
Sbjct: 100 VNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVLLLGFA 156
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILLTDRNL 638
S +++L +FV A + AF G A+T+L D+ +
Sbjct: 157 SILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLTFDKYI 215
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
T FFD A GGD + YQ+LF F+ HP VY++ P ++
Sbjct: 216 GTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLPFMAMV 254
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 91.1 bits (216), Expect = 3e-17
Identities = 58/217 (26%), Positives = 88/217 (40%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + + YN + T H L+PL++GA D+ FPR+
Sbjct: 81 RLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPMLEGFAVY-LIPLMIGARDLVFPRL 139
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
+ + + G +Y PLS++ G S D + + LA I+S
Sbjct: 140 GAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGLSADFWLIGITLAEIAS 199
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S ++P+ + + TAF +L +R L
Sbjct: 200 VTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPPLIIGSILLEAERLLGL 259
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
FFD GGDP+L+QHLF FGHPEVYI+ P G++
Sbjct: 260 PFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGMV 296
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 90.2 bits (214), Expect = 5e-17
Identities = 69/200 (34%), Positives = 81/200 (40%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R L G +IG QI VTA A L PL +GAP +A PR+
Sbjct: 28 RXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAXPRL 87
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
N+ F + G G VYPP SS +AH +VDL IF LHLAGISS
Sbjct: 88 XNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAGISS 147
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
++ LF A AIT+L R N
Sbjct: 148 XLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITMLXXXRXXNX 207
Query: 645 SFFDPAGGGDPILYQHLF*F 704
SFF P G P + F F
Sbjct: 208 SFFXPXXXGXPXXFPTFFXF 227
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 90.2 bits (214), Expect = 5e-17
Identities = 52/120 (43%), Positives = 62/120 (51%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFPR+
Sbjct: 22 RTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRM 81
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
NN+ F + G + PL G SVDLAIF LHLAG+SS
Sbjct: 82 NNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 89.8 bits (213), Expect = 6e-17
Identities = 59/217 (27%), Positives = 88/217 (40%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + + Y+++ T H N L PL+LG+ D+AFPR+
Sbjct: 75 RIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLMLGSRDMAFPRL 133
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
+ + G Y PL+S G ++D+ + L GIS+
Sbjct: 134 TAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYGLGMILLGIST 193
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S D+LP+ V + + A +L DRN T
Sbjct: 194 TGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFLLLWLDRNAGT 253
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
FFD A GG P+L+QHLF F HP VY+++ P GI+
Sbjct: 254 HFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGIV 290
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 89.8 bits (213), Expect = 6e-17
Identities = 66/218 (30%), Positives = 94/218 (43%), Gaps = 1/218 (0%)
Frame = +3
Query: 105 RAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
RAEL PG+ I D +N + T H N VP+++ D+A+P+
Sbjct: 46 RAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMVRYKDMAYPK 104
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGIS 461
+N I F + T PP S ++ G + D+ IF L + GIS
Sbjct: 105 LNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWIFGLKILGIS 158
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S S Q+PL + ++ A A+ +LLTDR
Sbjct: 159 SILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALLMLLTDRLGV 218
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+ FF+PA GGDPI Y HLF F HPEVY+L+ P G++
Sbjct: 219 SGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMM 256
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 89.4 bits (212), Expect = 8e-17
Identities = 59/217 (27%), Positives = 87/217 (40%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + D + YN + + H ++PL+LG D+ FPR+
Sbjct: 62 RLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLMLGTRDMTFPRL 120
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
N + ++ G YPPL+ G +D + IS+
Sbjct: 121 NAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYTTVVTFMEISA 180
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S +++P+FV AV + +F A +L DR
Sbjct: 181 LVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASLMLALDRMAGM 240
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
FF A GDPIL+QHLF FFGHPEVYI+ P G++
Sbjct: 241 HFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMV 276
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 89.0 bits (211), Expect = 1e-16
Identities = 59/200 (29%), Positives = 83/200 (41%)
Frame = +3
Query: 153 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 332
Y+ I TAH N +VPL +GA D+AFP +N++ F
Sbjct: 100 YDQIFTAHGVIMIIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVN 158
Query: 333 XXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 512
V N A TG YPPL+ VD I++L ++GI +
Sbjct: 159 LSLGVGNFARTGWVAYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVTVIKMRA 218
Query: 513 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 692
+P+F GA+ +L DR L+ FF GG+ ++Y +
Sbjct: 219 PGMKLMDMPIFTWTCTWANVLIATSFPILTGALAMLALDRYLDFHFFTAELGGNAMMYLN 278
Query: 693 LF*FFGHPEVYILIXPGFGI 752
LF +GHPEVYIL+ P FGI
Sbjct: 279 LFWAWGHPEVYILVLPAFGI 298
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 88.6 bits (210), Expect = 1e-16
Identities = 59/217 (27%), Positives = 85/217 (39%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA+L P S + YN + T H L+P +LG+ D+AFPR+
Sbjct: 55 RAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLLGSRDLAFPRL 113
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
F + +G +YPPLSS + G + D + + IS+
Sbjct: 114 TAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWLIGITFVEISA 173
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S ++P+F +TA +L +R +
Sbjct: 174 IAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSILLELERAFDM 233
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
FF A GGD +L+QHLF FGHPEVYI+ P G I
Sbjct: 234 PFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAGAI 270
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 87.8 bits (208), Expect = 3e-16
Identities = 65/218 (29%), Positives = 93/218 (42%), Gaps = 14/218 (6%)
Frame = +3
Query: 141 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 320
+ + Y +VT H N L+PL +GA D+A +N + +
Sbjct: 98 EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157
Query: 321 XXXXXXXIVENGAGTG*-TVYPPLSS---NVAHRGRSVDLAIFSLHLAGISSXXXXXXXX 488
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217
Query: 489 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP--- 659
SF +LPL + A ITA A +L+ DR+L TSFF
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIY 277
Query: 660 -AG------GGDPILYQHLF*FFGHPEVYILIXPGFGI 752
AG GG P+L+QHLF F GHPEVYI++ P GI
Sbjct: 278 IAGEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPALGI 315
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 87.0 bits (206), Expect = 4e-16
Identities = 61/221 (27%), Positives = 88/221 (39%), Gaps = 4/221 (1%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L PG + + +N + T HA N +PL++GA D+AFPR+
Sbjct: 55 RLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMIGARDVAFPRL 113
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNVAHRGRSVDLAIFSLHLA 452
N + ++ G G Y L+S G D L L
Sbjct: 114 NAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGPDFWTLGLLLL 173
Query: 453 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 632
GI + + ++P+FV +T+ A+ +L+ DR
Sbjct: 174 GIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVTVALIMLMFDR 233
Query: 633 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+FF+ GG + YQHLF FGHPEVYILI P GII
Sbjct: 234 TFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGII 274
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 87.0 bits (206), Expect = 4e-16
Identities = 58/200 (29%), Positives = 81/200 (40%)
Frame = +3
Query: 153 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 332
Y+ I TAH N VPL +GA D+AFP +N++ F
Sbjct: 99 YDQIFTAHGVIMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVN 157
Query: 333 XXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 512
V A TG YPPL+ G VD I++L L+G+ +
Sbjct: 158 ISLGVGEFAKTGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRA 217
Query: 513 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 692
+P+F A+ +L DR L+ F GG+P++Y +
Sbjct: 218 PGMKLMDMPIFTWTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPMMYVN 277
Query: 693 LF*FFGHPEVYILIXPGFGI 752
LF +GHPEVYILI P FG+
Sbjct: 278 LFWAWGHPEVYILILPAFGV 297
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 84.6 bits (200), Expect = 2e-15
Identities = 59/218 (27%), Positives = 85/218 (38%), Gaps = 1/218 (0%)
Frame = +3
Query: 105 RAELGNP-GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R +L P L+G D YN I T H L+P +L A D+ FPR
Sbjct: 65 RTQLAVPENDLVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQMLAARDLPFPR 122
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGIS 461
++ + G +YPPL+ G + D + + IS
Sbjct: 123 LSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWLLGIGFIEIS 182
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
+ S ++P+F A+ I A A +L +R+
Sbjct: 183 AIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPAVILATMLLEIERSFG 242
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
FF GGDP+L+QHLF FFGHPEVYI+ P G++
Sbjct: 243 WPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLPAAGLV 280
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 84.2 bits (199), Expect = 3e-15
Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 1/176 (0%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNVAH 407
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKV--PYLKMPLFVWGFFTTAILMIIA 196
Query: 588 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
+ +R T FFD A GG P+L+Q LF FFGHPEVYILI P G++
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGLV 252
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 83.0 bits (196), Expect = 7e-15
Identities = 56/217 (25%), Positives = 86/217 (39%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA+L +P S + Y + T H L+P +LG+ D+A+PR+
Sbjct: 55 RAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKMLGSRDLAYPRL 113
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
+ F + +G +YPPL+S + G + D + + IS+
Sbjct: 114 SAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWLLGITFVEISA 173
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S D++P++ +TA +L +R
Sbjct: 174 IAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSILLELERAFGL 233
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
FF A GGD +L+QHLF FGHPEVYI+ P G I
Sbjct: 234 PFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAGAI 270
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 81.4 bits (192), Expect = 2e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVD 425
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 426 LAIFS 440
LAI+S
Sbjct: 61 LAIYS 65
Score = 60.5 bits (140), Expect = 4e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +2
Query: 545 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 712
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 80.6 bits (190), Expect = 4e-14
Identities = 53/174 (30%), Positives = 73/174 (41%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHR 410
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGI 752
L DR L+ FF GG+ + + ++F FGHPEVYILI P FG+
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGV 317
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 80.6 bits (190), Expect = 4e-14
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Frame = +3
Query: 366 G*TVYPPLSSNVAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 536
G T P SSN+ + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 537 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 716
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 717 EVYILIXPGFGII 755
EVY+LI P FG I
Sbjct: 403 EVYVLIIPTFGFI 415
Score = 39.5 bits (88), Expect = 0.088
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 105 RAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL +P S GD Y +VTAH N L+P +G+ D+A+P
Sbjct: 86 RMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYP 145
Query: 279 RINNIRF 299
R+N+I F
Sbjct: 146 RLNSIGF 152
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 79.0 bits (186), Expect = 1e-13
Identities = 48/173 (27%), Positives = 74/173 (42%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGR 416
L+P +LGA D+ FPR++ F V G + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+ D + + IS+ + ++P+F A+ + A
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
A +L +R + FF GGDP+L+QHLF FFGHPEVYI+ P G++
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMV 339
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 79.0 bits (186), Expect = 1e-13
Identities = 63/229 (27%), Positives = 93/229 (40%), Gaps = 16/229 (6%)
Frame = +3
Query: 117 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 296
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 297 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NVAHRGRSVDLAIFSLHLA--GIS 461
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 642 TSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILIXPGFGII 755
TSFF P+G GG +L+QHLF FFGHPEVYI I P GI+
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAMGIV 302
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 79.0 bits (186), Expect = 1e-13
Identities = 49/174 (28%), Positives = 75/174 (43%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHR 410
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGI 752
+ + DR L+T F+ GG +LY +L +GHPEVYILI P FGI
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGI 292
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 76.6 bits (180), Expect = 6e-13
Identities = 33/41 (80%), Positives = 36/41 (87%)
Frame = +3
Query: 633 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
N T+FFDPAGGGD IL+QHLF FFGHPEVYILI PGFG+I
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMI 231
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 75.8 bits (178), Expect = 1e-12
Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 14/217 (6%)
Frame = +3
Query: 147 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 327 XXXXXIVENGAGTG*TVYP---PLSSNVAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 497
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 498 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 665
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269
Query: 666 -------GGDPILYQHLF*FFGHPEVYILIXPGFGII 755
GG P+L+QHLF F+ HP VYI++ P G++
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLPIMGMV 306
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 75.4 bits (177), Expect = 1e-12
Identities = 52/216 (24%), Positives = 78/216 (36%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + YN ++T HA N +PL LG D+A PR+
Sbjct: 58 RVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLGVRDVALPRL 117
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
N G T Y PL+ + G SV + L+ G+ S
Sbjct: 118 NTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAVILN--GLGS 175
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
++P+F ++ T+ A + + L
Sbjct: 176 LLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALLTYLEIKLGL 235
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGI 752
S F+P GG P+LYQ F F+ HP VY+++ P GI
Sbjct: 236 SMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPYLGI 271
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 73.7 bits (173), Expect = 4e-12
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 1/172 (0%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNVAHRG 413
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 414 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 593
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 594 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFG 749
G +LL ++ S++ GG +++++LF +FGHPEVY+L+ PG G
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTG 281
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 73.3 bits (172), Expect = 6e-12
Identities = 51/212 (24%), Positives = 80/212 (37%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L PG+ +N T H L+P +LGA D+ FPR+
Sbjct: 83 RVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LLPALLGARDLPFPRL 141
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
+ + + + +G +YPPL++ G D+ + L ++S
Sbjct: 142 SAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGSDIWLLGLSFIEVAS 199
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ +PL+ V + + +R +
Sbjct: 200 IAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEMERGFDW 259
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILIXP 740
FFDP GGDP+L+QHLF FGHPEVYI+ P
Sbjct: 260 PFFDPERGGDPLLWQHLFWIFGHPEVYIIFLP 291
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 73.3 bits (172), Expect = 6e-12
Identities = 43/98 (43%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 392
R+NNI F VE GAGTG TV LS
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLS 133
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 72.1 bits (169), Expect = 1e-11
Identities = 38/83 (45%), Positives = 48/83 (57%)
Frame = +3
Query: 384 PLSSNVAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 563
PL+S++AH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 564 TAFXXXXXXXXXAGAITILLTDR 632
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 218 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 343
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 70.9 bits (166), Expect = 3e-11
Identities = 46/175 (26%), Positives = 72/175 (41%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHR 410
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++ P FG I
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFI 317
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 68.9 bits (161), Expect = 1e-10
Identities = 55/230 (23%), Positives = 87/230 (37%), Gaps = 13/230 (5%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL + G+ + YN V+ H N LVPL +GA D+AFPR+
Sbjct: 48 RLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGFA-NYLVPLQIGADDLAFPRL 106
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN--VAHRGRSVDLAIFSLHLAGI 458
N + + G T+Y PL++ + G + +L +
Sbjct: 107 NALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIPGEGLGATSVVLALIMFTA 166
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
+ +P+F ++ +T + A+ IL +D L
Sbjct: 167 AVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLFAFAALLAALMILASDHIL 226
Query: 639 NTSFF-----------DPAGGGDPILYQHLF*FFGHPEVYILIXPGFGII 755
T++F D G +L+ HLF FFGHPEVYI+ P G++
Sbjct: 227 GTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYIVFFPALGVM 276
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 66.5 bits (155), Expect = 7e-10
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +3
Query: 105 RAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG+ I G+ Q+YN ++TAHA N VP+++G+PD+AFP
Sbjct: 40 RMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDMAFP 99
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 377
R+NNI F +VE G G+G TV
Sbjct: 100 RLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
Score = 36.7 bits (81), Expect = 0.62
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFG 61
++STNHKDIGTLY IFG
Sbjct: 9 LFSTNHKDIGTLYLIFG 25
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 65.3 bits (152), Expect = 2e-09
Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL N GS L G+ Q +N ++TAHA N L+PL+LGA D+AF
Sbjct: 42 RLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFA 101
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNV 401
R+NNI F +VE GAGTG TV SS +
Sbjct: 102 RLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 61.3 bits (142), Expect = 3e-08
Identities = 28/41 (68%), Positives = 29/41 (70%)
Frame = +2
Query: 632 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNXTRIWYN 754
K KYIIF S W F+STFILIFWT SLYFN T IWYN
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYN 47
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.7 bits (138), Expect = 8e-08
Identities = 29/41 (70%), Positives = 31/41 (75%)
Frame = +3
Query: 342 IVENGAGTG*TVYPPLSSNVAHRGRSVDLAIFSLHLAGISS 464
+VE G G G TVYPPL+S V H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 58.8 bits (136), Expect = 1e-07
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +3
Query: 105 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG+ L G+ Q++N +V HA N L+PL++GA D++F
Sbjct: 37 RLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGASDMSFA 96
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 377
R+NNI F +VE+GAGTG TV
Sbjct: 97 RLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 57.2 bits (132), Expect = 4e-07
Identities = 30/69 (43%), Positives = 39/69 (56%)
Frame = +3
Query: 528 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 707
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 708 GHPEVYILI 734
GH +V LI
Sbjct: 72 GHTDVLFLI 80
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +2
Query: 548 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 700
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 46.8 bits (106), Expect = 6e-04
Identities = 39/172 (22%), Positives = 62/172 (36%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNVAHRGR 416
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIXPGFGI 752
+ L+D + F+ G P+ Y F F HPEVY+ I P F I
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAI 346
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 43.6 bits (98), Expect = 0.005
Identities = 36/140 (25%), Positives = 43/140 (30%)
Frame = +2
Query: 224 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*CR 403
I KL P NK +KIL TPL Y N C K C + +NSLP
Sbjct: 62 IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121
Query: 404 T*RKIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXX 583
T R +F T CM +YS
Sbjct: 122 TLGPFRSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTS 181
Query: 584 XTTCFSWSYYNIINRSKLKY 643
+ S+YNI K KY
Sbjct: 182 FSPSIGSSHYNITYWPKPKY 201
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 40.3 bits (90), Expect = 0.050
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +3
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 591 XXXAGAITILLTDRNLNT 644
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
Score = 33.1 bits (72), Expect = 7.6
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 105 RAELGNPGSLIGDDQIYNTIVTAHA 179
R EL GS++ +QIYNT+VT+HA
Sbjct: 22 RLELETCGSVLRSEQIYNTLVTSHA 46
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 40.3 bits (90), Expect = 0.050
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 702 FFGHPEVYILIXPGFGII 755
FFGHPEVYILI PGFG+I
Sbjct: 2 FFGHPEVYILILPGFGMI 19
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 37.1 bits (82), Expect = 0.47
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 702 FFGHPEVYILIXPGFGII 755
FFGHPEVY+LI P FGI+
Sbjct: 1 FFGHPEVYVLILPVFGIV 18
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia
polymorpha (Liverwort)
Length = 802
Score = 36.7 bits (81), Expect = 0.62
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFG 61
++STNHKDIGTLY IFG
Sbjct: 9 LFSTNHKDIGTLYLIFG 25
>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
Harmonia axyridis (Multicolored Asian lady beetle)
Length = 193
Score = 36.7 bits (81), Expect = 0.62
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 689 TFILIFWTS*SLYFNXTRIWYN 754
+ ++IFW+S SLYFN IWYN
Sbjct: 2 SLVMIFWSSSSLYFNSPSIWYN 23
>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
- Locustacarus buchneri
Length = 185
Score = 34.7 bits (76), Expect = 2.5
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +2
Query: 560 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNXT 739
+Y+ TT S S +N N SKL++I+ S PN I ILI T L+ N T
Sbjct: 94 NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153
Query: 740 RI 745
I
Sbjct: 154 SI 155
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2;
Eukaryota|Rep: Maturase-like protein - Pellia epiphylla
Length = 843
Score = 33.9 bits (74), Expect = 4.4
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFG 61
++STNHKDIGT Y IFG
Sbjct: 9 LFSTNHKDIGTPYLIFG 25
>UniRef50_Q0FZJ0 Cluster: Cell wall surface anchor family protein;
n=1; Fulvimarina pelagi HTCC2506|Rep: Cell wall surface
anchor family protein - Fulvimarina pelagi HTCC2506
Length = 667
Score = 33.1 bits (72), Expect = 7.6
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = -2
Query: 418 DLPLCATLDESGG*TVHPVPAPFSTILLEINNIREGGRSQNLILFIRGNAISGAPSIRG 242
D+P AT+DES G T P S + + G Q + I GN SG PS RG
Sbjct: 191 DIPAMATVDESTG-TTDEAPV-VSDLQGTVTESGPGSLEQQMDAAIAGNGSSGTPSKRG 247
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,193,877
Number of Sequences: 1657284
Number of extensions: 9843713
Number of successful extensions: 22054
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 20291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21784
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -