Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F15
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...   151   1e-37
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...   151   1e-37
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   4.9  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   6.5  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   8.6  

>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score =  151 bits (365), Expect = 1e-37
 Identities = 82/187 (43%), Positives = 118/187 (63%), Gaps = 2/187 (1%)
 Frame = +1

Query: 166 KMEVDYSATCDEXLPLWKSWAAQGKIQ--EAIDQLLALEKQTRTGADMVSTSRILVTVVQ 339
           K EVDYS   ++   L KS      I     +++LL  EKQ R  +D  + +++L+ +  
Sbjct: 4   KPEVDYS---EKFAELQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIAD 60

Query: 340 IYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTIT 519
           + F A ++  LN+ +V L K+  QLKQ++  +VQ   TY+    D +TKI LIETLRTIT
Sbjct: 61  LLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTIT 120

Query: 520 EGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVXTYGSMDKREKVELILEQMXL 699
           +GKIYVEVERARLT +L++I+EE+G++  A +I+    V TYGS D +EKV  IL+Q+ L
Sbjct: 121 DGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRL 180

Query: 700 CLAIKDY 720
            L   DY
Sbjct: 181 FLLRSDY 187


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score =  151 bits (365), Expect = 1e-37
 Identities = 82/187 (43%), Positives = 118/187 (63%), Gaps = 2/187 (1%)
 Frame = +1

Query: 166 KMEVDYSATCDEXLPLWKSWAAQGKIQ--EAIDQLLALEKQTRTGADMVSTSRILVTVVQ 339
           K EVDYS   ++   L KS      I     +++LL  EKQ R  +D  + +++L+ +  
Sbjct: 4   KPEVDYS---EKFAELQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIAD 60

Query: 340 IYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTIT 519
           + F A ++  LN+ +V L K+  QLKQ++  +VQ   TY+    D +TKI LIETLRTIT
Sbjct: 61  LLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTIT 120

Query: 520 EGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVXTYGSMDKREKVELILEQMXL 699
           +GKIYVEVERARLT +L++I+EE+G++  A +I+    V TYGS D +EKV  IL+Q+ L
Sbjct: 121 DGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRL 180

Query: 700 CLAIKDY 720
            L   DY
Sbjct: 181 FLLRSDY 187


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
 Frame = +1

Query: 400 RRSQLKQAVVKMVQECYTYVDKTPDKETKI-----KLIETLRTITEGK-IYVEVE--RAR 555
           +RS  K+     V+ C++ +D  P K  ++      L +T + ++E K I+ E+E    R
Sbjct: 678 QRSLDKEEEKLFVEHCHSMIDVIPSKSAEVYSHLETLTKTFKNLSEAKPIFDEIELLDKR 737

Query: 556 LTHILAKIREEEGNV 600
           L+    ++ + +G++
Sbjct: 738 LSETKTELSDLQGDL 752


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 451 TYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAK 615
           T+  K  ++ TK++    +R I +       + A+    L K REEE   AEAAK
Sbjct: 29  TFGLKNKNRSTKVQA--KIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAEAAK 81


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/56 (21%), Positives = 29/56 (51%)
 Frame = +1

Query: 463 KTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQEL 630
           +TPD  +++K  E  + + + + Y++ ++A  + +      + G+ A A K   E+
Sbjct: 370 RTPDILSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTEM 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,154
Number of Sequences: 5004
Number of extensions: 48816
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)