Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_F15
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211... 184 9e-47
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 31 1.3
07_01_0459 - 3478756-3478923,3479027-3479092,3479200-3479280,347... 29 2.9
12_01_0143 + 1096622-1096882,1096951-1097264,1097361-1097382 29 5.1
12_01_0090 + 717524-719080 28 6.8
10_01_0042 + 562246-563550 28 6.8
08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951 28 6.8
>03_06_0701 -
35620559-35620777,35620872-35620949,35621038-35621191,
35621279-35621391,35621487-35621586,35622193-35622389,
35622470-35622526,35622630-35622734,35622824-35622931,
35623651-35623848,35624022-35624024
Length = 443
Score = 184 bits (447), Expect = 9e-47
Identities = 87/166 (52%), Positives = 120/166 (72%)
Frame = +1
Query: 241 IQEAIDQLLALEKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQ 420
+ AI+ LL +EKQ R D+ T + + +V++ ++A W LND IVVLSKRR QLKQ
Sbjct: 8 LDAAIESLLNVEKQMRLAGDVAGTRKAAIDIVELCYKAGAWKTLNDQIVVLSKRRGQLKQ 67
Query: 421 AVVKMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNV 600
A+ MVQ+ Y+D TPD +T+I+LI+TL +++ GKIYVE+ERARL LAKI+EE+G +
Sbjct: 68 AITAMVQKAMEYIDLTPDMDTRIELIKTLSSVSAGKIYVEIERARLIKRLAKIKEEQGQI 127
Query: 601 AEAAKIIQELQVXTYGSMDKREKVELILEQMXLCLAIKDYVRTQII 738
EAA ++QE+ V T+GSM K EK+ ILEQ+ LCL +DYVR QI+
Sbjct: 128 DEAADLMQEVAVETFGSMAKTEKIAFILEQVRLCLDRQDYVRAQIL 173
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +1
Query: 166 KMEVDYSATCDEXLPLW-----KSWAAQGKIQEAIDQLL-ALEKQTRTGADMVSTSRILV 327
K+EVD S + W K + Q K A ++ A EK+TR T +
Sbjct: 507 KVEVDLSLSAHANARRWYELKKKQESKQEKTVTAHEKAFKAAEKKTRLQLAQEKTVAAIT 566
Query: 328 TVVQIY-FEAKNWSALNDHIVVLSKRRSQLKQAVVK 432
+ +++ FE NW +++ +++S R +Q + +VK
Sbjct: 567 HMRKVHWFEKFNWFISSENYLIISGRDAQQNELIVK 602
>07_01_0459 -
3478756-3478923,3479027-3479092,3479200-3479280,
3479402-3479479,3479625-3479711,3480127-3480223,
3480266-3480339,3480687-3480775,3480878-3480926,
3481090-3481146,3481256-3481357,3482365-3482382
Length = 321
Score = 29.5 bits (63), Expect = 2.9
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = +1
Query: 274 EKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYT 453
E+ T M S S ++ + K ++D V+ R + + V + V +T
Sbjct: 126 EQTTGVHKAMNSCSSTMLAKFYRAVKKKLKERMDDFQVLREAIRQEYRDVVERRV---FT 182
Query: 454 YVDKTPDKETKIKLIETLRTITEGKIYVEVE-RARLTHILAKIREEEGNVAEAAKIIQEL 630
PD+ET LIET R+ + ++ + R ++ +A+I+E V + + + EL
Sbjct: 183 VTGSRPDEETVDNLIETGRSEQIFQEAIQQQGRGQILDTVAEIQERHDAVRDLERKLLEL 242
Query: 631 Q 633
Q
Sbjct: 243 Q 243
>12_01_0143 + 1096622-1096882,1096951-1097264,1097361-1097382
Length = 198
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Frame = +1
Query: 208 PLWKSWAAQGKIQE-----AIDQLLALEK 279
P+WK + QGK QE A++QLL LEK
Sbjct: 91 PIWKWFTTQGKEQEDAYEAAMEQLLVLEK 119
>12_01_0090 + 717524-719080
Length = 518
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 211 LWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRI-LVTVVQIYFEAKNWSALNDHIV 387
LWK A ++ ID + R +++ T LVT+ +Y EAK W + +H+
Sbjct: 443 LWKMLLAACRVHGHIDLAYMFFHELR---ELILTDNGGLVTISNVYAEAKRWDDV-EHLR 498
Query: 388 VLSKRRSQLKQA 423
+ + S LK A
Sbjct: 499 MKVRCNSALKHA 510
>10_01_0042 + 562246-563550
Length = 434
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 364 SALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKL 495
S+L +HI+V ++RR+ + +AV ++ +C T V T + + L
Sbjct: 234 SSLINHIIVGARRRATVFEAVAAVLWQCRTRVVMTDPEAPAVLL 277
>08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951
Length = 189
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 475 KETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEE 591
K TKIKL++ T+ GK+Y V +T L R+E+
Sbjct: 81 KITKIKLLKPKETLLLGKVYRLVTSQEVTKALQARRQEK 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,574,224
Number of Sequences: 37544
Number of extensions: 286177
Number of successful extensions: 546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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