Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F15
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17110| Best HMM Match : PCI (HMM E-Value=2.1e-26)                  284   5e-77
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)                  29   3.0  
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)                     29   5.2  
SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0)              28   6.9  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        28   9.1  

>SB_17110| Best HMM Match : PCI (HMM E-Value=2.1e-26)
          Length = 451

 Score =  284 bits (697), Expect = 5e-77
 Identities = 131/195 (67%), Positives = 170/195 (87%)
 Frame = +1

Query: 154 GKIIKMEVDYSATCDEXLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRILVTV 333
           G ++KMEVDYS T D+ +P  ++ AA+GK+ E++D LL+LEKQTRT ADM ST+RILV +
Sbjct: 9   GNVVKMEVDYSETVDKRIPECEALAAEGKLTESLDILLSLEKQTRTAADMHSTARILVCI 68

Query: 334 VQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRT 513
           VQ+ F+A++W+ALN+HI++L+KRRSQLKQAV KM+QE YTY+D+TPD ETK+KLI+TLRT
Sbjct: 69  VQLCFKAQDWNALNEHIILLTKRRSQLKQAVTKMIQESYTYIDQTPDMETKLKLIDTLRT 128

Query: 514 ITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVXTYGSMDKREKVELILEQM 693
           +T GKIYVE+ERARLT +LAKI+E EGN+ EAA I+QELQV T+GSM+++EKVE I+EQM
Sbjct: 129 VTAGKIYVEIERARLTMMLAKIKENEGNITEAANILQELQVETFGSMERKEKVEFIMEQM 188

Query: 694 XLCLAIKDYVRTQII 738
            LCLA KDY+RTQII
Sbjct: 189 RLCLAKKDYIRTQII 203


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
 Frame = +1

Query: 364 SALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIE-TLRTITEGKIYVE 540
           S L   I  L   ++QLKQA  K+  +    V+   D   KIK +E  L    E + + E
Sbjct: 595 SKLLKEIADLKNDKNQLKQANQKLGHDRERAVEDAKDAFAKIKDLEKQLEDAIEKRKHAE 654

Query: 541 VERARLTHILAKIREEEGNVAEAAKIIQELQVXTYGSMDKRE 666
            E   L   L K+++E  +       +Q+        +DK E
Sbjct: 655 QESDELEADLQKLKDELASTKRHIADLQDKHEALKDELDKTE 696


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 25/79 (31%), Positives = 43/79 (54%)
 Frame = +1

Query: 397  KRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAK 576
            +R ++++Q  VK+ QE + Y  +T +       +E L+   E +I  E E+  L   +A+
Sbjct: 1698 RRVAEMEQ--VKVAQEQHLYAQETDE-------LEQLKKTYEERI--EREKGALEASIAR 1746

Query: 577  IREEEGNVAEAAKIIQELQ 633
             +EEE    EAA+ +QE Q
Sbjct: 1747 RKEEERRAEEAARRLQESQ 1765


>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 508  RTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVXTYGSMDKRE 666
            RT+   +  +   +A L  +++ +RE++ ++AEA   I ELQ     S+ ++E
Sbjct: 1329 RTVEPKRAKLAAAQAELEVVMSPLREKQASLAEAESKIAELQAAYDHSIAEKE 1381


>SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)
          Length = 633

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 37/172 (21%), Positives = 70/172 (40%)
 Frame = +1

Query: 151 SGKIIKMEVDYSATCDEXLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRILVT 330
           S K  ++E D  A   E   + KS   Q  +Q+ +D LL  +KQ   G   + ++  +  
Sbjct: 92  SQKRAQLEGDLEAKTQEIATM-KSTEKQ--LQKQMDDLLDEKKQMEEGYSKLKSASAM-- 146

Query: 331 VVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLR 510
                 +      L D +       +  K  V ++ +E      +  D E+K+K ++  R
Sbjct: 147 ------DDLQMKELQDQLEAEQYFSTLYKTQVKELREEVDEKTKQVTDIESKVKQLKEER 200

Query: 511 TITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVXTYGSMDKRE 666
                ++ + + +A    +   I EE+ +  E  K + EL+V    +  K E
Sbjct: 201 ESLSAQLELTLTKADSEQLARSIAEEQYSDLEKEKTMIELEVKELIARHKSE 252


>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
          Length = 1998

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +1

Query: 478  ETKIKLIET-LRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQE--LQVXTYG 648
            E+ IKLI+  L    + K+    E+ +    L  +R+E GN+ E  KIIQE      ++G
Sbjct: 1717 ESDIKLIKKGLEFEYDQKL--SAEKRKFEETLQGLRKEVGNLQEKRKIIQERVYNQESFG 1774

Query: 649  SMDK 660
            ++D+
Sbjct: 1775 AVDR 1778


>SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0)
          Length = 374

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +1

Query: 523 GKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVXTYGSMDKREKVE 675
           G  Y  VERA + H++ K ++  G + E  ++  E ++    + ++++K+E
Sbjct: 276 GYFYDPVERAIIRHVVTKRQQVYGKLDEELRLSMEKEIMARAA-EQKKKIE 325


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
 Frame = +1

Query: 397  KRRSQLKQAVVKMVQECYTYVDKTPDKETKIKL----IETLRT-ITEGKIYVEVERARLT 561
            KRR+  ++ +  M  E  T  D+  + + + K     +E L   +T+   YVE  R    
Sbjct: 963  KRRTSAEEDLDDMQTELQTLKDEMAEGQRRYKKQQDKLEALNVELTKEHEYVEELRENRR 1022

Query: 562  HILAKIREEEGNVAEAAKII--QELQV 636
             + AKI E E  +A  A II  Q +Q+
Sbjct: 1023 KLEAKINELEQKLASQADIIPMQPIQI 1049


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,604,049
Number of Sequences: 59808
Number of extensions: 352331
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)