Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F15
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome regu...   181   5e-46
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AY308063-1|AAQ75554.1|  290|Caenorhabditis elegans EXC-4 protein.      28   6.0  
AL132876-18|CAD21669.2|  290|Caenorhabditis elegans Hypothetical...    28   6.0  

>U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 5 protein.
          Length = 490

 Score =  181 bits (440), Expect = 5e-46
 Identities = 95/195 (48%), Positives = 128/195 (65%)
 Frame = +1

Query: 154 GKIIKMEVDYSATCDEXLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRILVTV 333
           G++ KME DYS   DE L L     AQ     A++ L  +EK TR GADM S +R++  +
Sbjct: 34  GRLFKMEQDYSKQVDEAL-LKARDIAQKDAVAAVESLNNIEKLTRLGADMKSNTRVVQYM 92

Query: 334 VQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRT 513
            ++ FE + W  L + I+ LSK+R  +K A+ KMV++    +DK P ++ K+KLIETLRT
Sbjct: 93  TKLCFEGQKWDLLMETIMTLSKKRLLIKMAIAKMVRDAVAMIDKMPTEDLKMKLIETLRT 152

Query: 514 ITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVXTYGSMDKREKVELILEQM 693
           +T GKIYVEVERARLT ++ K  E EG + EAA ++ ELQV TYGSM+ REKV+ +LEQM
Sbjct: 153 VTAGKIYVEVERARLTSMVVKKLEREGKLDEAATMLLELQVETYGSMEMREKVQYLLEQM 212

Query: 694 XLCLAIKDYVRTQII 738
              L   D+VR  II
Sbjct: 213 RYSLVRNDFVRATII 227


>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
           protein W02B8.2 protein.
          Length = 1256

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/65 (24%), Positives = 36/65 (55%)
 Frame = +1

Query: 499 ETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVXTYGSMDKREKVEL 678
           +TL+   EG     +E+     ++A+IR  E ++    K+ QEL++    ++ + +K+E 
Sbjct: 444 KTLKETAEGSRRRAIEQCN--EMVARIRGLEASLENQRKVEQELEMVKAENVRQAKKIEF 501

Query: 679 ILEQM 693
           + E++
Sbjct: 502 MKEEI 506


>AY308063-1|AAQ75554.1|  290|Caenorhabditis elegans EXC-4 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 572 PKFEKKKAM*QRLQK*YKNFK--XRRMVQWTRGKK 670
           P FEK  +  +R++  Y+NFK   R  V++ +GKK
Sbjct: 110 PLFEKDPSAEKRIENLYRNFKLFLRAKVEFDKGKK 144


>AL132876-18|CAD21669.2|  290|Caenorhabditis elegans Hypothetical
           protein Y105E8A.22 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 572 PKFEKKKAM*QRLQK*YKNFK--XRRMVQWTRGKK 670
           P FEK  +  +R++  Y+NFK   R  V++ +GKK
Sbjct: 110 PLFEKDPSAEKRIENLYRNFKLFLRAKVEFDKGKK 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,906,356
Number of Sequences: 27780
Number of extensions: 280305
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)