Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_F13
(571 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.29
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_17735| Best HMM Match : PAN (HMM E-Value=0.00083) 31 0.66
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_29285| Best HMM Match : DUF1201 (HMM E-Value=2.4) 29 3.5
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094) 28 4.7
SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2) 28 6.2
SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071) 27 8.2
SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4) 27 8.2
>SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 47.6 bits (108), Expect = 7e-06
Identities = 27/80 (33%), Positives = 45/80 (56%)
Frame = +2
Query: 155 PLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVG 334
P+P R +E D++AL+ KEKG W L+ E++ LY++ F +T E + K VVG
Sbjct: 26 PVPIAR-QEFGSDLEALKAKEKGPWTALSKEDRVALYQSQFPKTLQESKLGEPYAKKVVG 84
Query: 335 WALVLSSLAAWIYMAMKVFV 394
VL SL+ + ++ ++
Sbjct: 85 GVGVLISLSLAFFAFLRTYM 104
>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1102
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 236 ICANHPFLFHGEP*CQGCPHGTGWQAGGSQACLHSWAGR*NHSLPTHGHQSWQVQC 69
IC + FL CQ CP GT +A G AC+ G+ + T+ V C
Sbjct: 567 ICVSGKFLNTTTLSCQVCPKGTFQEANGKTACIPCTGGKITLNNATNSSSGCLVAC 622
>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1261
Score = 31.5 bits (68), Expect = 0.50
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 152 FPLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAE-FQAPTGEWKGV 328
FPLP F +LR ++ +L+ ++ RA+ + E F++P G KG
Sbjct: 1034 FPLPVGFFCLVYCLFMSLRGTQRNS-NELSESYRERETRAAVLEVVCEAFRSPAGSSKGA 1092
Query: 329 VGWALVLSSLAAWIYMAMKVFVYSP 403
V W VL++ ++++ + F+ SP
Sbjct: 1093 VYWESVLTA-RRFVFLCLAAFIKSP 1116
>SB_17735| Best HMM Match : PAN (HMM E-Value=0.00083)
Length = 431
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Frame = +2
Query: 107 GYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKG--DWRKLTLEEKKTLYRASFC 280
GY + G D + LP +R G +W +LT+ E TLY
Sbjct: 258 GYNYEGGKALDDEQETKLPTFWATPMKHVCIGMRNSSGGTVEWLQLTVRELTTLYEVFST 317
Query: 281 QTFAEFQAPTGEWKGVVG 334
P +W G+VG
Sbjct: 318 NNHHPTNIPLSKWLGLVG 335
>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 227 WRKLTLEEKKTLYRASFCQTFAEFQAPTGEW 319
WRK + EKK + C+T + + P+G W
Sbjct: 210 WRKASHAEKKVVRACPICRTPSGYVVPSGVW 240
>SB_29285| Best HMM Match : DUF1201 (HMM E-Value=2.4)
Length = 332
Score = 28.7 bits (61), Expect = 3.5
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 3/156 (1%)
Frame = +2
Query: 59 STGNTELAKIGDREWVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKGDWRKL 238
+TG T+L ++ N + DRP L ++ D P AL R +
Sbjct: 66 NTGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGVVVTRSV 125
Query: 239 TLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSL 418
T R FC+ +A P VVG L ++ +A W Y ++ I DS
Sbjct: 126 TATLASADVRRCFCR-YA--PPPIASVYLVVGLLLAVAVVAIW-YCHKQIVESRRIRDSG 181
Query: 419 SEE-RQKAQLQRMLDLKVNPIDGLASKW--DYENNR 517
++ R++ + +RM D +V ++ +W Y NR
Sbjct: 182 EQQPRRRRRPRRMNDSQVVSVN---QQWFDHYSGNR 214
>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
Length = 1671
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 395 TQRLSWPCRSKQPKMRGLEPNQRLPSTLRWGPGTQRRSDR 276
T S P +S M PN +PST + GP RR +R
Sbjct: 1035 TPNTSMPTKSTPTSMPRKTPNTFIPSTPQVGPTPPRRGNR 1074
>SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)
Length = 341
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 206 REKEKGDWRKLTLEEKKTLYRASFCQT 286
RE + D ++ +E+KK + +A+FCQT
Sbjct: 77 REILENDEKRCPIEDKKKVKKATFCQT 103
>SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071)
Length = 210
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 244 RRKENSVQSFILSDLR*VPGPHRRVEGSRWLGSSPLIFGCLDLHG 378
R KE V ++LSD V GPH+R++ S W + G L+ G
Sbjct: 71 RCKEVQVIPWVLSDTNYVRGPHQRLDTS-WTVFVGGLHGMLNAEG 114
>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
Length = 330
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 422 HSMSQE*DCTQRLSWPCRSKQPKMRGLEPNQRLPST 315
HS C R P K+PK R L P QR ST
Sbjct: 193 HSHHYRRICRYRQRRPLTPKRPKTRQLPPEQRCKST 228
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,826,887
Number of Sequences: 59808
Number of extensions: 455904
Number of successful extensions: 1393
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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