Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_F11
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0600 - 30273080-30274692,30274709-30274949 32 0.36
02_04_0413 + 22681957-22682035,22682253-22682788 32 0.48
06_03_0854 + 25400855-25403741,25406174-25407708 31 0.84
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 30 1.5
05_03_0458 + 14280953-14281866,14281964-14282912 30 1.9
11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110... 29 2.6
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 29 3.4
07_01_0533 + 3942813-3943164,3943244-3943458 29 4.5
10_08_0853 - 21076085-21076138,21076188-21076333,21076540-210766... 28 7.8
08_01_0955 + 9478018-9478773 28 7.8
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026 28 7.8
04_04_1108 + 30961600-30962013,30963131-30964465 28 7.8
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 28 7.8
02_01_0740 - 5511434-5511547,5511952-5512023,5512106-5512300,551... 28 7.8
01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701 28 7.8
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 32.3 bits (70), Expect = 0.36
Identities = 24/73 (32%), Positives = 29/73 (39%)
Frame = +2
Query: 119 FCSPLICWSSCRGRCWREMSGTWSAPRAPSGHSPPTTTRPSCCCAVLVYRRPCTLPCSGC 298
+C L W CR RCW S +P+G P T S C A L+ RR S
Sbjct: 459 WCFRLHGWPLCR-RCWASTS-------SPTGLPSPPPTGVSACTAGLLCRRCWASTSSPT 510
Query: 299 SDTSPMPPLCERC 337
SP+P C
Sbjct: 511 GLPSPLPTGVSAC 523
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 31.9 bits (69), Expect = 0.48
Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Frame = +2
Query: 137 CWSSCRGRCWREMSGTW----SAPRAPS--GHSPPTTTRPSCCCAVLVYRRPCTLPCSGC 298
C S G C SG P +PS H PP +P CCC CSG
Sbjct: 107 CCESAAGCCCNGCSGGGCGGGQCPPSPSCENHHPPC--KPGCCCC----------GCSGG 154
Query: 299 SDTSPMPPLCERCNC*PTPTPSYKP 373
P P C+ C PTP + P
Sbjct: 155 ECPPPPSPPCQH-ECPPTPPCEHPP 178
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +2
Query: 152 RGRCWREMSGTWSAPRAPSGHSPPTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLCE 331
RGR E++ +P AP+ +P + T P V++ P TL SG + P+P + E
Sbjct: 732 RGRIPTEVTVGTPSPSAPTP-APASATAPLIQSNVVISPVPPTLAASGVAAWPPVPAIPE 790
Query: 332 RCNC*PTPTPSYKP 373
P P KP
Sbjct: 791 LTTAAAAPLPE-KP 803
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 233 RPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLCERCNC*PTPTPSYKP 373
+P C C+ PC+ P GC D PP C P P P P
Sbjct: 106 KPGCPCSCST---PCSFPPIGCHDRGICPPPCPPPCPLPCPPPCPLP 149
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Frame = +2
Query: 188 SAPRAPSGHSPPTT-TRPSCCCAVLVYRRPCTLPCSGCS------DTSPMPPLCERCNC* 346
+AP PS +S PT+ T P+ ++ P + P S P+PP C+
Sbjct: 29 AAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPLQPTPPPLPPTTLSCSSH 88
Query: 347 PTPTPSYKP 373
PTP P P
Sbjct: 89 PTPPPPPSP 97
>11_03_0150 +
10810322-10810380,10810530-10810593,10810803-10811047,
10811627-10811747,10811821-10811895,10811986-10812112,
10812194-10812939,10813065-10813195,10813547-10813636,
10814000-10814105
Length = 587
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -1
Query: 297 QPLQGRVHGRRYTSTAQQQLGLVVVGGECPDGARGADHVPDISRQQRPRQELQQIR 130
Q +Q HG+R Q Q L + G P + +S+ QRP+Q LQ+ R
Sbjct: 357 QRMQSTSHGQRPHQPVQSQWPLQSLQGRRPQQSPQNTRPQLMSKSQRPQQSLQRQR 412
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 194 PRAPSGHSPPTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPP 322
P +PS + P+T C + PC P S SDTSP P
Sbjct: 131 PPSPSSDTSPSTPGGGCSSSPT----PCDAPPSPSSDTSPTTP 169
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 188 SAPRAPSGHSPPTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPP 322
SAP +PS + PTT + PC P S SDTSP P
Sbjct: 413 SAPPSPSSGTSPTTPGGGYSPST-----PCNAPPSPSSDTSPTTP 452
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 188 SAPRAPSGHSPPTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPP 322
+ P +PS + P+T C + PC P S SDTSP P
Sbjct: 465 NVPPSPSSGTSPSTPGGGCSSSPT----PCDAPPSPSSDTSPTTP 505
>07_01_0533 + 3942813-3943164,3943244-3943458
Length = 188
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 161 CWREMSGTWSAPRAP--SGHSPPTTTRPSCCCAVL 259
C MSG SAP+ + S T++P+C CAVL
Sbjct: 49 CLGYMSGNSSAPKPSCCTALSSVVTSKPACLCAVL 83
>10_08_0853 -
21076085-21076138,21076188-21076333,21076540-21076645,
21076739-21076816,21076923-21076979,21077070-21077130,
21077360-21077412,21077613-21077699,21077820-21077899,
21079469-21079681,21079824-21080064
Length = 391
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 143 SSCRGRCWREMSGTWSAPRAPSGHS 217
+SC C E+ TW AP +P H+
Sbjct: 349 NSCFAHCQSELQETWLAPNSPRLHN 373
>08_01_0955 + 9478018-9478773
Length = 251
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 182 TWSAPRAPSGHSPPTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLCERC 337
T A AP+ PP T S P T PC+G T+ PP C
Sbjct: 62 THCALAAPTLRHPPAVTPSSAT--------PATAPCAGAGSTTTAPPAAWTC 105
>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
Length = 961
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = +2
Query: 221 PTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPP 322
P + PSCC + +PC C+ P P
Sbjct: 715 PPSKPPSCCVTFSAFYNESVIPCRTCACGCPASP 748
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 191 APRAPSGHSPPTTTRPSCCCAVL-VYRRPCTLPCSGC-SDTSPMPPL 325
AP + +PPT C AVL V P C C ++ +P PPL
Sbjct: 67 APATATAAAPPTRVSCGGCAAVLSVPHGPGRFSCPLCGAEIAPPPPL 113
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Frame = +2
Query: 125 SPLICWSSCRGRCWRE---------MSGTWSAPRAPSGHSPPTTTRPSCC 247
S L C SSCR WR +S W+APRA +G TT + S C
Sbjct: 14 SSLECVSSCR-TSWRGGGRPYECSVLSCAWNAPRALTGALASTTAQCSSC 62
>02_01_0740 -
5511434-5511547,5511952-5512023,5512106-5512300,
5512408-5512611,5512690-5512848,5513144-5513249,
5513387-5513554,5513644-5513834,5514410-5514634,
5514818-5514935,5515023-5515195,5515280-5515327,
5515484-5515589,5515697-5515802,5516211-5516332,
5516661-5516741,5516844-5516934,5517036-5517132,
5517287-5517919
Length = 1002
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 259 GIPAAVHSALQRLQRHQSDAASMRALQLLTYTNTV 363
GIP + +QRL R QS + + QL T+ NTV
Sbjct: 782 GIPKILEKQVQRLTRRQSISPYVVPNQLGTFMNTV 816
>01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701
Length = 369
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +2
Query: 218 PPTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPPL-CERCNC 343
PP RP LV P P + P+PPL RC C
Sbjct: 7 PPPPPRPPLGRGRLVGVGPAPAPATASQSNRPVPPLQLPRCRC 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,312,460
Number of Sequences: 37544
Number of extensions: 237595
Number of successful extensions: 883
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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