Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_F11
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066) 30 2.0
SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22) 29 2.6
SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 3.4
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_37136| Best HMM Match : PI3Ka (HMM E-Value=1.7) 28 6.0
SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5) 28 6.0
>SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 616
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 203 PSGHSPPTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLCERCNC*PT 352
P +PP +T P C + LP C T +P LCE C PT
Sbjct: 314 PPVSTPPVSTPPHTACLPTLCEHTACLPTL-CEHTVCVPTLCEHTACVPT 362
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 215 SPPTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLCERCNC*PT 352
+PP +T P V LP C T+ +P LCE C PT
Sbjct: 308 TPPVSTPPVSTPPVSTPPHTACLPTL-CEHTACLPTLCEHTVCVPT 352
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 32.3 bits (70), Expect = 0.37
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +2
Query: 167 REMSGTWSAPRAPSGHSPPTT----TRPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLCER 334
+EM+ APS +PPTT TR R T+P + S+T PP +
Sbjct: 1395 QEMAAVQQTTEAPSTTAPPTTVEDKTREEATTKPTTTTRKTTIPTTTASETK--PPTIRK 1452
Query: 335 CNC*PTPTPSYKP 373
T P+ KP
Sbjct: 1453 TTTATTTVPATKP 1465
>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
Length = 361
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 212 HSPPTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLCERCNC*P-TPTPSYKPRDNKY 388
HSPPT RP C + RPC P + P C+ P T P + P + +
Sbjct: 125 HSPPTAVRP--CHSPPTAVRPCHSPPNTVRPCHSPPNTVRPCHSPPNTVRPCHSPPNTVH 182
Query: 389 KLHT 400
H+
Sbjct: 183 PCHS 186
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +2
Query: 212 HSPPTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLCERCNC*PTPT-PSYKP 373
HSPP T RP C + RPC P + P C+ PT P + P
Sbjct: 275 HSPPNTVRP--CHSPPTAFRPCHSPPNTVRPCHSPPNTVRPCHSPPTAVRPCHSP 327
>SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)
Length = 869
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Frame = +2
Query: 140 WSSCRGRCWRE---MSGTWSAPR-AP-SGHSPPTTTRPSCCCAVLVY---RRPCTLPCSG 295
WS+C C R SGTW +P S T S C + ++ TLP S
Sbjct: 89 WSACPVACGRGEKYTSGTWYTTEWSPCSATCGRGTQSRSVICRRETFTGSKQYETLPDSS 148
Query: 296 CSDTSPMPPLCERCNC*PTPTPSYKPRD 379
C+ + P L ++CN P P + P D
Sbjct: 149 CTGSKPTVTLTQKCNKVNCP-PEWVPSD 175
>SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 348 LHQHRLTSHVIINTNFIHSFYNNREKENEFL 440
L+ H +++ +NT+F+H ++NN +FL
Sbjct: 2 LYHHTYHNNICVNTDFLHVYHNNICVNTDFL 32
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +2
Query: 212 HSPPTTT---RPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLCERCNC*PTPTPSYKPRDN 382
H PP +T R S +L R+ + C TSP P + P+P+P Y P
Sbjct: 682 HPPPLSTPQPRQSTALPLLTTRQLLQVILL-CLGTSPTSPQYSPASTGPSPSPEYSPSSP 740
Query: 383 KY 388
Y
Sbjct: 741 NY 742
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 182 TWSAPRAPSGHSPP-TTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLCERCNC*P-TP 355
T S PR PS S P T + PS + R P T PC+ + +P P P TP
Sbjct: 391 TPSTPRTPSTPSTPCTPSTPSTPSTPITPRTPST-PCTHSTPGTPSTPSTPSTPSTPSTP 449
Query: 356 TPSYKP 373
+ ++ P
Sbjct: 450 SLTHTP 455
>SB_37136| Best HMM Match : PI3Ka (HMM E-Value=1.7)
Length = 477
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 185 WSAPRAPSGHSPP 223
WS+PR PSGH+ P
Sbjct: 368 WSSPRTPSGHTQP 380
>SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)
Length = 649
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 143 SSCRGRCWREMSGTWSAPRAPSGHSPPTTTRPS 241
S+C R + WS P +P SP T+ RPS
Sbjct: 214 STCMSPQVRRVRSQWSVPSSPIICSPATSPRPS 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,739
Number of Sequences: 59808
Number of extensions: 277667
Number of successful extensions: 914
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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