Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F11
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    35   0.061
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    31   0.56 
Z37983-3|CAA86056.1|  621|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in ...    30   1.7  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical ...    29   2.3  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    29   3.0  
U41536-4|AAK39238.2|  419|Caenorhabditis elegans Defective fasci...    28   5.3  
AF176087-1|AAD55066.1|  419|Caenorhabditis elegans nuclear hormo...    28   5.3  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    28   6.9  
AC006630-3|AAK68325.1|  257|Caenorhabditis elegans Hypothetical ...    28   6.9  

>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 34.7 bits (76), Expect = 0.061
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 218 PPTTTRPSCCCAVLVYRRPCTLPC---SGCSDTSPMPPLCERCNC*PTPTPS 364
           PP  + P+CC A  V   PC  P    + C  ++P P  C RC   P   P+
Sbjct: 154 PPPPSAPACCVAAPVPTNPCCQPAPRPAPCVCSAPRPVPC-RCGAPPMECPN 204



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
 Frame = +2

Query: 191 APRAPS--GHSPPTTTRPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLCERCNC*PTPTPS 364
           AP AP      PPT +   CC    V   PC   C   +   P PP    C C   P P+
Sbjct: 115 APAAPCCPPPPPPTPSPLVCCKQAPVPENPC---CQIVAAAMPPPPSAPAC-CVAAPVPT 170


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
 Frame = +2

Query: 122 CSPLICWSSCRGRCWREMSGTWSAPRAPSGHSPPTTTRPSCCCAVLVYRRPCTLPCSG-C 298
           CS  IC  SC+  C +    T   P+     S   T+  +    V      C+  CS  C
Sbjct: 204 CSTPICIQSCQSSCQQACQPT-CQPQCMPSCSSSCTSNQAPIVIVAQQGDSCSNSCSNQC 262

Query: 299 SDTSPMPPLCERCN 340
               P P   ++CN
Sbjct: 263 QSACPTPICVQQCN 276


>Z37983-3|CAA86056.1|  621|Caenorhabditis elegans Hypothetical
           protein B0393.3 protein.
          Length = 621

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 222 GGECPDGARGADHVPDISRQQRPRQELQQIRGLQKSNAMIMRPV 91
           G   P   +G+D +   SR  RP+++ Q+ R  Q+ +  I +PV
Sbjct: 562 GAPGPPKEKGSDKILKHSRPSRPKRQAQKERVQQRRSGNIQKPV 605


>AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 4 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 RPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLC 328
           +PSC C    Y +P    CS C +T+P+   C
Sbjct: 38  QPSCSCQQTTYAQPPQYSCS-CQNTAPVQTSC 68


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 RPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLC 328
           +PSC C    Y +P    CS C +T+P+   C
Sbjct: 36  QPSCSCQRTTYTQPQQYSCS-CQNTAPVQKSC 66


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 RPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLC 328
           +PSC C    Y +P    CS C +T+P+   C
Sbjct: 36  QPSCSCQRTTYTQPQQYSCS-CQNTAPVQKSC 66


>AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.6 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 RPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLC 328
           +PSC C    Y +P    CS C +T+P+   C
Sbjct: 36  QPSCSCQRTTYTQPQQYSCS-CQNTAPVQTSC 66


>AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.5 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 RPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLC 328
           +PSC C    Y +P    CS C +T+P+   C
Sbjct: 36  QPSCSCQRTTYTQPQQYSCS-CQNTAPVQTSC 66


>AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.4 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 RPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLC 328
           +PSC C    Y +P    CS C +T+P+   C
Sbjct: 36  QPSCSCQRTTYTQPQQYSCS-CQNTAPVQTSC 66


>AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.3 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 RPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLC 328
           +PSC C    Y +P    CS C +T+P+   C
Sbjct: 36  QPSCSCQRTTYTQPQQYSCS-CQNTAPVQTSC 66


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 RPSCCCAVLVYRRPCTLPCSGCSDTSPMPPLC 328
           +PSC C    Y +P    CS C +T+P+   C
Sbjct: 36  QPSCSCQQTPYTQPQETSCS-CQNTAPVQTSC 66


>U41536-4|AAK39238.2|  419|Caenorhabditis elegans Defective
           fasciculation of axonsprotein 1 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +2

Query: 215 SPPTTTRPSCCCAVL----VYRRPCTLPCSGCS 301
           SPPT + P+ CCAV       +    L C+GCS
Sbjct: 91  SPPTASSPTLCCAVCGDVSSGKHYGILACNGCS 123


>AF176087-1|AAD55066.1|  419|Caenorhabditis elegans nuclear hormone
           receptor FAX-1 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +2

Query: 215 SPPTTTRPSCCCAVL----VYRRPCTLPCSGCS 301
           SPPT + P+ CCAV       +    L C+GCS
Sbjct: 91  SPPTASSPTLCCAVCGDVSSGKHYGILACNGCS 123


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +2

Query: 182 TWSAPRAPSGHSPPTTTRPSCCCAVLVY-RRPCTLPC 289
           T +AP  P    PP    P+ CC    Y R PC   C
Sbjct: 137 TPAAPPPPPPPPPPAPEAPTQCCGSQPYGRTPCRSGC 173


>AC006630-3|AAK68325.1|  257|Caenorhabditis elegans Hypothetical
           protein F14H12.3 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
 Frame = +2

Query: 164 WREMSGTWSAPRAPSGHSPPTTTRPSCCCAV-----LVYRRPC----TLPCSGCSDTSPM 316
           W   S +WSA     G     T    C C        V + PC      PC+ C+     
Sbjct: 142 WTAWS-SWSACSVTCGSGGSITRSRQCSCGSGCTGGSVEQEPCPQQAACPCTTCNQP--- 197

Query: 317 PPLCERCNC*P----TPTP 361
           PP C  CN  P    TP P
Sbjct: 198 PPPCNTCNTQPVVIVTPAP 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,364,428
Number of Sequences: 27780
Number of extensions: 197553
Number of successful extensions: 684
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)