Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F09
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...   219   5e-58
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    28   1.5  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    27   2.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   3.4  
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    26   7.9  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    26   7.9  

>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score =  219 bits (534), Expect = 5e-58
 Identities = 111/244 (45%), Positives = 162/244 (66%)
 Frame = +2

Query: 128 LFGKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDAEPQTDI 307
           LF K  KS  ++VR L D +  LE  + K +K+ E+VSK L  ++  L GT++ EP  D+
Sbjct: 4   LFNKRPKSTQDVVRCLCDNLPKLEINNDK-KKSFEEVSKCLQNLRVSLCGTAEVEPDADL 62

Query: 308 IVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTKPE 487
            V+ L+ ++Y             +++FE KKD   +F+ +LRR + +R PTV+Y+   P+
Sbjct: 63  -VSDLSFQIYQSNLPFLLVRYLPKLEFESKKDTGLIFSALLRRHVASRYPTVDYMLAHPQ 121

Query: 488 ILFTLMSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAF 667
           I   L+S Y +QE+A   G++LREC+R+EAL +++L S DF+ FF  ++ S+FD+ASDAF
Sbjct: 122 IFPVLVSYYRYQEVAFTAGSILRECSRHEALNEVLLNSRDFWTFFSLIQASSFDMASDAF 181

Query: 668 STFKELLTRHKILCAEFLXANYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFSI 847
           STFK +L  HK   AEF+  ++D+ F  Y  LL SENYVT+RQSLKLLGE+LL+R N S+
Sbjct: 182 STFKSILLNHKSQVAEFISYHFDEFFKQYTVLLKSENYVTKRQSLKLLGEILLNRANRSV 241

Query: 848 MTRY 859
           MTRY
Sbjct: 242 MTRY 245


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/72 (27%), Positives = 28/72 (38%)
 Frame = +2

Query: 578 LAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLXANYDKVFSHYQ 757
           L + M YS   ++ F    +   DIA     TF       + LC  F      + F+HY 
Sbjct: 439 LNQTMYYSQSEHDGF----IGVLDIAGFEIFTFNSF----EQLCINFTNEKLQQFFNHYM 490

Query: 758 RLLNSENYVTRR 793
            +L  E Y   R
Sbjct: 491 FVLEQEEYTQER 502


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 734 DKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHN 838
           D V  +    L  + Y+T R+ LK + E   D HN
Sbjct: 335 DLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHN 369


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 740  VFSHYQRLLNSENYVTRRQSLKLLGELL 823
            +FS    LLN +N V R QSL L  +L+
Sbjct: 1109 LFSKLCNLLNDKNIVVRNQSLSLFHQLV 1136


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 215 AEKAQEDVSKNLVLIKNMLYGTSDAEPQTDIIVAQLAQ 328
           A +AQED +K L L+   +YGT   + +T++   +L +
Sbjct: 185 AAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEE 222


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 527 IASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTF 676
           +A NC  +L +  RY   A I +  D   +   + +   F I  D  ST+
Sbjct: 123 VAKNCSVVLEDQKRYRIRASINM--DSIIDITVHQDAPPFKIGEDGNSTY 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,701
Number of Sequences: 5004
Number of extensions: 65176
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)