Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_F09
(859 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical pr... 295 3e-80
U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical pr... 294 6e-80
Z99277-3|CAB16486.1| 338|Caenorhabditis elegans Hypothetical pr... 288 3e-78
AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein. 29 3.2
AF039716-8|AAB96738.1| 384|Caenorhabditis elegans Paf-acetylhyd... 29 3.2
AF025464-3|AAB71016.3| 949|Caenorhabditis elegans Transporter o... 29 3.2
Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical p... 29 5.6
Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical p... 29 5.6
>U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical protein
R02E12.2a protein.
Length = 636
Score = 295 bits (724), Expect = 3e-80
Identities = 150/266 (56%), Positives = 189/266 (71%), Gaps = 16/266 (6%)
Frame = +2
Query: 110 RLNTMPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKN 247
R MPL FGKS KSPA++V++L++ +T L++ DKK +KA ++VSKN
Sbjct: 256 RRKVMPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKN 315
Query: 248 LVLIKNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFN 421
+ +IK+ +YG AEP ++ +V AQLAQE+Y + +FE KKDV Q+FN
Sbjct: 316 VAMIKSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFN 375
Query: 422 NVLRRQIGTRSPTVEYICTKPEILFTLMSGYEHQEIASNCGTMLRECARYEALAKIMLYS 601
N+LRRQIGTRSPTVEY+ +PEIL L+ GY +IA CG MLRE R++ LAKI+LYS
Sbjct: 376 NLLRRQIGTRSPTVEYLGARPEILIQLVQGYSVPDIALTCGLMLRESIRHDHLAKIILYS 435
Query: 602 DDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLXANYDKVFSHYQRLLNSENY 781
D FY FF YV+ FDI+SDAFSTFKEL TRHK + AEFL +NYD F+ YQ LLNS+NY
Sbjct: 436 DVFYTFFLYVQSEVFDISSDAFSTFKELTTRHKAIIAEFLDSNYDTFFAQYQNLLNSKNY 495
Query: 782 VTRRQSLKLLGELLLDRHNFSIMTRY 859
VTRRQSLKLLGELLLDRHNF+ MT+Y
Sbjct: 496 VTRRQSLKLLGELLLDRHNFNTMTKY 521
>U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical
protein R02E12.2b protein.
Length = 377
Score = 294 bits (721), Expect = 6e-80
Identities = 149/262 (56%), Positives = 188/262 (71%), Gaps = 16/262 (6%)
Frame = +2
Query: 122 MPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKNLVLI 259
MPL FGKS KSPA++V++L++ +T L++ DKK +KA ++VSKN+ +I
Sbjct: 1 MPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKNVAMI 60
Query: 260 KNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLR 433
K+ +YG AEP ++ +V AQLAQE+Y + +FE KKDV Q+FNN+LR
Sbjct: 61 KSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNLLR 120
Query: 434 RQIGTRSPTVEYICTKPEILFTLMSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFY 613
RQIGTRSPTVEY+ +PEIL L+ GY +IA CG MLRE R++ LAKI+LYSD FY
Sbjct: 121 RQIGTRSPTVEYLGARPEILIQLVQGYSVPDIALTCGLMLRESIRHDHLAKIILYSDVFY 180
Query: 614 NFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLXANYDKVFSHYQRLLNSENYVTRR 793
FF YV+ FDI+SDAFSTFKEL TRHK + AEFL +NYD F+ YQ LLNS+NYVTRR
Sbjct: 181 TFFLYVQSEVFDISSDAFSTFKELTTRHKAIIAEFLDSNYDTFFAQYQNLLNSKNYVTRR 240
Query: 794 QSLKLLGELLLDRHNFSIMTRY 859
QSLKLLGELLLDRHNF+ MT+Y
Sbjct: 241 QSLKLLGELLLDRHNFNTMTKY 262
>Z99277-3|CAB16486.1| 338|Caenorhabditis elegans Hypothetical
protein Y53C12A.4 protein.
Length = 338
Score = 288 bits (707), Expect = 3e-78
Identities = 140/250 (56%), Positives = 180/250 (72%), Gaps = 5/250 (2%)
Frame = +2
Query: 125 PLFGKSQKSPAELVRSLKDAVTALER-----GDKKAEKAQEDVSKNLVLIKNMLYGTSDA 289
PLFGK+ K+PA++V++L+DA+ ++R ++K EKA E+ +K L L K +YG+
Sbjct: 4 PLFGKADKTPADVVKNLRDALLVIDRHGTNTSERKVEKAIEETAKMLALAKTFIYGSDAN 63
Query: 290 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 469
EP + V QLAQE+Y + +FE KKDVA VFNN+LRRQIGTRSPTVEY
Sbjct: 64 EPNNEQ-VTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGTRSPTVEY 122
Query: 470 ICTKPEILFTLMSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFD 649
+ +PEIL TL+ GYE +IA CG+MLRE R+E LA+I+LYS+ F FF +V+ FD
Sbjct: 123 LAARPEILITLLLGYEQPDIALTCGSMLREAVRHEHLARIVLYSEYFQRFFVFVQSDVFD 182
Query: 650 IASDAFSTFKELLTRHKILCAEFLXANYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLD 829
IA+DAFSTFK+L+T+HK +CAE+L NYD+ F Y L NSENYVTRRQSLKLLGELLLD
Sbjct: 183 IATDAFSTFKDLMTKHKNMCAEYLDNNYDRFFGQYSALTNSENYVTRRQSLKLLGELLLD 242
Query: 830 RHNFSIMTRY 859
RHNFS M +Y
Sbjct: 243 RHNFSTMNKY 252
>AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein.
Length = 384
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 401 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 502
D VF N L +Q G PT Y+C + I TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350
>AF039716-8|AAB96738.1| 384|Caenorhabditis elegans
Paf-acetylhydrolase protein 1 protein.
Length = 384
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 401 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 502
D VF N L +Q G PT Y+C + I TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350
>AF025464-3|AAB71016.3| 949|Caenorhabditis elegans Transporter of
sr proteins protein1 protein.
Length = 949
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 560 ILAASCHSWKLSLDVHTLTSV*IIFQAWYKCTLLLEIVFQFD 435
+L A H W L + + L + + F WY+ T E +F++D
Sbjct: 297 LLVAKHHDWALKIAIFLLQLIEMSFNVWYRIT---EELFKYD 335
>Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical
protein T27E9.4b protein.
Length = 591
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +2
Query: 548 MLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLXA 727
M +++ +AKI LY+DD +F + V++ ++ ++S F EL ++ + LC L
Sbjct: 1 MFASDVKHDKIAKIPLYTDDDLDFIK-VDILD-EMYKKSYSIFNELRSKCQ-LCDVALLV 57
Query: 728 NYDKVFSH 751
K+ +H
Sbjct: 58 ENRKLSAH 65
>Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical
protein T27E9.4a protein.
Length = 589
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +2
Query: 548 MLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLXA 727
M +++ +AKI LY+DD +F + V++ ++ ++S F EL ++ + LC L
Sbjct: 1 MFASDVKHDKIAKIPLYTDDDLDFIK-VDILD-EMYKKSYSIFNELRSKCQ-LCDVALLV 57
Query: 728 NYDKVFSH 751
K+ +H
Sbjct: 58 ENRKLSAH 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,017,248
Number of Sequences: 27780
Number of extensions: 357273
Number of successful extensions: 965
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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