Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F09
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.89 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   2.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   4.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   4.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   8.3  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   8.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +2

Query: 59   PKVQSYVDIITYITCPSRLNTMPLFGKSQKSPA--ELVRS---LKDAVTALERGDKKAEK 223
            PK+   VDI     C  +   + + GK ++SP   ELV +   +KD V  ++RG+K    
Sbjct: 1265 PKMDFNVDIRYGKNC-GKGERIDMNGKLRQSPRLKELVGATSIIKDCVEDMKRGNKILRT 1323

Query: 224  AQEDVSKNLVL 256
             Q+ V  +++L
Sbjct: 1324 CQKAVVLSMLL 1334


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 638 KLLHNGRNYKNHLNTTLF 585
           K +HN  NY N+ N  L+
Sbjct: 310 KTIHNNNNYNNYNNKKLY 327


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 257 IKNMLYGTSDAEPQTDIIVAQLAQ 328
           IKNM+ GTS A+    I+ A + +
Sbjct: 99  IKNMITGTSQADCAVLIVAAGIGE 122


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 638 KLLHNGRNYKNH 603
           K +HN  NYKN+
Sbjct: 321 KTIHNNNNYKNY 332


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 301 CLWFCIRCTIKHIFNQYQILAH 236
           C W C  CT      QYQI  H
Sbjct: 605 CCWHCFNCT------QYQIRDH 620


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 257 IKNMLYGTSDAEPQTDIIVA 316
           IKNM+ GTS A+    I+ A
Sbjct: 26  IKNMITGTSQADCAVLIVAA 45


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 257 IKNMLYGTSDAEPQTDIIVA 316
           IKNM+ GTS A+    I+ A
Sbjct: 42  IKNMITGTSQADCAVLIVAA 61


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 257 IKNMLYGTSDAEPQTDIIVA 316
           IKNM+ GTS A+    I+ A
Sbjct: 99  IKNMITGTSQADCAVLIVAA 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,051
Number of Sequences: 438
Number of extensions: 4619
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)