Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F03
         (651 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3U0P1 Cluster: Partner and localizer of BRCA2; n=4; Mu...    35   1.9  
UniRef50_Q235W5 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  

>UniRef50_Q3U0P1 Cluster: Partner and localizer of BRCA2; n=4;
           Murinae|Rep: Partner and localizer of BRCA2 - Mus
           musculus (Mouse)
          Length = 1104

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 124 LQSSLPVLTMCSIAAPYATISPRPSLCAAALPILG 228
           L SS+ + T    AAP  +  P PSLC+ A PILG
Sbjct: 617 LSSSIVLFTPADTAAPNDSGRPPPSLCSPAFPILG 651


>UniRef50_Q235W5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 559

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
 Frame = +1

Query: 259 INFIGSKLN*GFLDDSNYTGQLH-----I*GNTKFPSIGDEDSVNFRPSPNFRLMKKYL- 420
           +NF+ S     FLDD    GQLH       GN+    I  +D+ NF PS   R +K+Y  
Sbjct: 392 LNFLDSSFELDFLDDEKQLGQLHRQYKTRIGNSSSRRIKSQDNQNFVPS--LRDVKQYAQ 449

Query: 421 KYKIGEESHSPQYHGVAEISETEAMKRKKHEQTE 522
           +  I   +         EI++ +  + KK EQ +
Sbjct: 450 RTSITNCNLKRNLKQHTEINKFQQKEIKKIEQNQ 483


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,846,982
Number of Sequences: 1657284
Number of extensions: 10167347
Number of successful extensions: 26637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26623
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)