Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_F03
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 29 0.77
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 27 1.8
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 27 1.8
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 27 3.1
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 4.1
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.4
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 7.2
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.2
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 25 9.5
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 25 9.5
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 28.7 bits (61), Expect = 0.77
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 382 RPSPNFRLMKKYLKYKIGEESHSPQYHGVAEISETEAMKR--KKHEQTEKV 528
R +P + KYLKY +SH QYH + E R K+ +Q E++
Sbjct: 32 RSTPRVSGIAKYLKYA---QSHDQQYHPTESLEEKRLRLRDEKQKQQRERL 79
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 84 EIKEINANFRNRYSAIKSTCIDDVQYRCALR 176
E+KEIN F ++ S + CID ++ L+
Sbjct: 549 EMKEINGEFADKLSRVALDCIDAAEHYLELK 579
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 351 EYRG*RFCQFSAIAELQTYEKILKIQDRGGESLAPISWSSRN 476
+YR R Q A+A K+ I DRGG LAP + SR+
Sbjct: 129 DYR--RVMQKRALAASAPKRKVQMIDDRGGSLLAPGTLGSRS 168
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 277 KLN*GFL-DDSNYTGQLHI*GNTKFPSIGDEDSVNFRPSPNFRLMKKYLKYKIGEESHSP 453
KL FL D+ T +LHI T+ ++ D S+N + L+ +L
Sbjct: 265 KLAKNFLVSDATVTKRLHIINPTEIKNLLDSKSINLSLVSKYLLVSAFLA-SYNPSRLDA 323
Query: 454 QYHGVAEISETEAMKRKK 507
Q+ ++ S+ KRK+
Sbjct: 324 QFFSFSKTSKRRGRKRKQ 341
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 177 YDFATPITLRRRITDPGRLTSVSDTDLYQFYRLKIKLRLPRRQQLHR 317
++FA I++ R+I PG L + D + QF+ ++ L P QL +
Sbjct: 723 FEFAVFISMVRKIVRPGVLYFLRDPNDPQFHPIREILEKPMLFQLKK 769
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 54 YRKTIKE*VTEIKEINANFRNRY 122
+ K++ E T++ E N NF NR+
Sbjct: 250 HEKSLNERATKLSEANENFNNRF 272
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 109 SETDILQSSLPVLTMCSIAAPYATISPRP---SLCAAALP 219
+E SS P + + AAP AT +P P S AAALP
Sbjct: 102 AEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALP 141
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 416 YFFISLKFGDGRKLTESSSPILGN--FVLPHMC 324
YFF+SL F D + + P L N F+ H+C
Sbjct: 672 YFFLSLSFRDPILVLSTMKPYLCNITFLGSHLC 704
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 87 IKEINANFRNRYSAIKSTCIDDVQYRCALRYDFATPIT-LRRRITDPGRLTSVSDTDLYQ 263
+K ++ F A C+D +Q R + YD A +T ++ + DP S ++ + Q
Sbjct: 70 VKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNN-ASPANAEAAQ 128
Query: 264 FYR 272
+R
Sbjct: 129 LHR 131
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +1
Query: 358 GDEDSVNFRPSPNFRLMKKYLKYKIGEESHSPQYHGVA 471
G+ED +++P+P R+ K + S+ + G++
Sbjct: 31 GEEDDDSYKPAPRIRINNNKTKAQTTTNSNEARQSGIS 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,545
Number of Sequences: 5004
Number of extensions: 45175
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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