Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F03
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0232 + 32526411-32526513,32526615-32526716,32528285-325284...    28   5.6  
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    27   9.8  

>03_06_0232 +
           32526411-32526513,32526615-32526716,32528285-32528442,
           32528599-32528706
          Length = 156

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 431 ILYFKYFFISLKFGDGRKLTESSSPILGNFVLPHMCNCP 315
           ++  KYFF  +         E+S P+ G FVL H    P
Sbjct: 78  VIDVKYFFFHVHSESHNLCEETSCPVTGEFVLAHEQTLP 116


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 FRHAHHFAPPHYRSWAPDFSFRHG 253
           F H + FA   YRS +PD SFR+G
Sbjct: 664 FTHRYSFAR-QYRSPSPDHSFRYG 686


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,379
Number of Sequences: 37544
Number of extensions: 283902
Number of successful extensions: 716
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)