Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F03
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25436| Best HMM Match : 7tm_1 (HMM E-Value=9.49996e-41)             31   0.81 
SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)             30   1.4  
SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31)               28   7.6  
SB_3494| Best HMM Match : Protamine_P1 (HMM E-Value=9.4)               28   7.6  

>SB_25436| Best HMM Match : 7tm_1 (HMM E-Value=9.49996e-41)
          Length = 321

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -1

Query: 528 NLLCLLMFLSFHRFCF*DFCYSMILGRVTLLPDLVF*VFFHKSEVRRWPKIDRIFIPYTR 349
           ++LC ++FL    F    FCY  I+  + L   +   V  + SE+    ++ R+ I  T 
Sbjct: 173 HVLCTVLFLGVAPFLILSFCYIQIVSGLFLTKKICSEVTGNSSEIEAKKRLARLLISVTL 232

Query: 348 E--LCIASY 328
              +C  SY
Sbjct: 233 AFYVCYISY 241


>SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
          Length = 712

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 172 RAQRYCTSSIQVDLIAEYLFLKFAFISFISVTYSF 68
           R + YC SS  +D   E +F+K+  +  ++++Y F
Sbjct: 233 RGRYYCYSSWNIDTKREIIFVKYEMVLTVAMSYGF 267


>SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31)
          Length = 801

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 436 EESHSPQYHGVAEISETEAMKRKKHEQTE 522
           EE+ SP  H VAE  E ++ + KK+ +TE
Sbjct: 151 EETGSPVEHEVAENVEDDSSQTKKNNETE 179


>SB_3494| Best HMM Match : Protamine_P1 (HMM E-Value=9.4)
          Length = 96

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 512 SRQRRFIHHYLTAHRCRRRNHSLQISKRKSMMTRRH 619
           SR RR+      +H  R R H+ Q++K KS +  R+
Sbjct: 36  SRFRRYDFCLQPSHATRSRQHTTQVAKSKSALQLRY 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,537,676
Number of Sequences: 59808
Number of extensions: 342581
Number of successful extensions: 876
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)