Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F03
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z81146-5|CAB03522.3|  699|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z46787-13|CAA86748.1|  281|Caenorhabditis elegans Hypothetical p...    27   8.7  

>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 364 HPLYSGTLYCLICAIVLCSCC 302
           HP    T+YCL C + +CS C
Sbjct: 279 HPGEGLTMYCLACKVPVCSRC 299


>Z81146-5|CAB03522.3|  699|Caenorhabditis elegans Hypothetical
           protein K10D11.3 protein.
          Length = 699

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 345 VPEYRG*RFCQFSAIAELQTYEKILKIQDRGGESLAPISWSSRNLRNRSD 494
           +P Y+  +FC+++ +   +T+     I D   +S   I+ S+ N  N  D
Sbjct: 60  IPRYKSNQFCKWTVVIPDRTFINFTMIADIADDSALMITDSNGNQENSFD 109


>Z46787-13|CAA86748.1|  281|Caenorhabditis elegans Hypothetical
           protein C16C10.10 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 488 SVSEISATP*YWGE*LSSPILYFKYFFISLKFGDGR 381
           +V ++  +  YW E L  PI+  K   I + +GDG+
Sbjct: 139 NVGDLEKSKKYWNETLGMPIVEEKSSRIRMSYGDGQ 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,062,453
Number of Sequences: 27780
Number of extensions: 257395
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)