Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F03
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.9  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   5.9  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   5.9  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   5.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   5.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.9  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 198 TLRRRITDPGRLTSVSDTDLYQFYRLKIKLRLPRRQQLHRTI 323
           T  RR T  G   + + T +YQF   + ++ L + ++  RT+
Sbjct: 290 TSSRRTT--GSRAAATTTTVYQFIEERQRISLSKERRAARTL 329


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 198 TLRRRITDPGRLTSVSDTDLYQFYRLKIKLRLPRRQQLHRTI 323
           T  RR T  G   + + T +YQF   + ++ L + ++  RT+
Sbjct: 290 TSSRRTT--GSRAAATTTTVYQFIEERQRISLSKERRAARTL 329


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 325 HI*GNTKFPSIGDEDSVNFRPSPNFR 402
           HI  +T FP     ++  FRPS N R
Sbjct: 146 HIGPSTPFPRFIPPNAYRFRPSLNPR 171


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 325 HI*GNTKFPSIGDEDSVNFRPSPNFR 402
           HI  +T FP     ++  FRPS N R
Sbjct: 146 HIGPSTPFPRFIPPNAYRFRPSLNPR 171


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 325 HI*GNTKFPSIGDEDSVNFRPSPNFR 402
           HI  +T FP     ++  FRPS N R
Sbjct: 146 HIGPSTPFPRFIPPNAYRFRPSLNPR 171


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 325 HI*GNTKFPSIGDEDSVNFRPSPNFR 402
           HI  +T FP     ++  FRPS N R
Sbjct: 379 HIGPSTPFPRFIPPNAYRFRPSLNPR 404


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 198 TLRRRITDPGRLTSVSDTDLYQFYRLKIKLRLPRRQQLHRTI 323
           T  RR T  G   + + T +YQF   + ++ L + ++  RT+
Sbjct: 290 TSSRRTT--GSRAAATTTTVYQFIEERQRISLSKERRAARTL 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,265
Number of Sequences: 438
Number of extensions: 3187
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)