Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F02
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    31   0.14 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.55 
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    29   0.72 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    27   2.9  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   3.9  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    26   6.7  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.9  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   8.9  

>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 554 FQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEM 718
           FQ+ +  Q  +   +E  LN+  Y  Y E+ P P   S  ++ E + E  E  EM
Sbjct: 89  FQLVDERQIEEPGEDEMALNAGGYYPYAEEVPPPSYPSLEEENEGNEEIEESEEM 143


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 491 NGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYK 607
           NG+  V+N W+L NG  I +   +A++   +K+ T   K
Sbjct: 653 NGIQRVVNYWLLHNGFSIGIGDTIADA-DTMKEVTRTVK 690


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +2

Query: 581 LKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGE 715
           +++ TNE K++    L   ++AP+P+ +++I ++   + A +KGE
Sbjct: 6   VERNTNETKISVAIAL---DKAPLPEESNFIDELITSKHANQKGE 47


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 735 NDLLSFISPFSRASLSRSIFCIYDAVSGTGACSIYL 628
           N L+SF +PF +AS+      ++ + + TGA  I+L
Sbjct: 419 NFLISFFTPFIQASIGFKYGYVFASCNLTGAIVIFL 454


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -1

Query: 759  IYIQYLXRNDLLSFISPFSRA--SLSRSIFCIYDAVSG--TGACSIYLK*NLELSLYSLV 592
            +Y  YL RN + SFI  FSRA   L  S   + + +SG   G C +      +L+++S++
Sbjct: 1484 LYKYYLRRNFVSSFIDAFSRAFSELLSSNKDVLEVLSGLEAGQCLLITFAQNKLTVHSVL 1543


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
 Frame = +2

Query: 29  LIQLLIVPFKFEIIYGCVFYLKIQLVIKFTNVVLIYLTKLIIMQQFT----LLFVVHLTA 196
           LI +L V   F   +GCV  L+     K    VLI LT LI++        L+ +  +  
Sbjct: 91  LIAVLAVSVVFFTAWGCVNPLEKSTFGKIAFFVLIGLTCLILLITMILEPGLIGISIMKR 150

Query: 197 LFASTAGIDYDGFLNMKLEHSLNCNDEKFCHRGSITLKSIR 319
           L       + D F+  +L  S +C+  +  H  S T   +R
Sbjct: 151 LIGDNGNDERDYFVENRLLSSPDCDARQ--HANSDTAIPLR 189


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 305  LKSIRTGVPIIDQILFNEKHL 367
            L  +R  +PI+D+  F EKHL
Sbjct: 1380 LNFLRNFIPILDEQKFREKHL 1400


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 488 ENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKL 610
           EN   + +   ++PNG  IAVN Q  N    LK A  E+KL
Sbjct: 477 ENRFGESVTVDLIPNGRNIAVNNQ--NKMNYLK-ALTEHKL 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,549
Number of Sequences: 5004
Number of extensions: 49019
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)