Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F02
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890...    58   1e-08
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324...    32   0.57 
07_03_0708 - 20865786-20867153                                         29   3.1  
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581...    29   4.0  

>11_03_0008 +
           8901817-8902146,8903058-8903120,8903226-8903321,
           8903924-8903971,8904558-8904629,8905373-8905431,
           8905582-8905672,8905749-8905886
          Length = 298

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 9/194 (4%)
 Frame = +2

Query: 206 STAGIDYDGFLNMKLEHSLNCNDEKFCHRGSIT--LKSIRTGVPIIDQILFNEKHL---- 367
           S+A       +   LEH L      F   GS +  LKS   G   + ++ F    L    
Sbjct: 70  SSAAAAESSAVQFSLEHDLGAG---FVPAGSFSARLKSSAHGSQTLTKLRFTRNELTGDE 126

Query: 368 -EALKKLANEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVI 544
            +A KKL +ED FYSI+      + ++    +SS+KA+      L + I    +    ++
Sbjct: 127 KDAFKKLLDEDGFYSIRLLSNVLDPARKDYVVSSIKARCIPRESLDEHI-VIHMDGVNIL 185

Query: 545 AVNF-QVANSTQPLK-QATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEM 718
           AVN+  V   T P   +  +++  NS   L+  EQA  P T S++ ++        +   
Sbjct: 186 AVNYGSVGGCTYPRPVKMPSKWVFNSYTVLKTSEQA--PRTPSFVDQLIEAENGLGEVVK 243

Query: 719 KDNRSFLXKYWMYI 760
              +SF  KYWMYI
Sbjct: 244 SPEKSFWAKYWMYI 257


>09_03_0179 -
           13131404-13131514,13131834-13131920,13132316-13132448,
           13133079-13133319,13133423-13133540,13133546-13133731,
           13133864-13134049,13134443-13134652,13135171-13135347,
           13135823-13135964,13136385-13136927,13137565-13138022
          Length = 863

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 110 KFTNVVLIYLTKLIIMQQFTLLF--VVHLTALFASTAGIDYDGFLNMKLEHSL 262
           KFT VV+++  K +IM  + +L   V HL  +  S++ + Y+    ++  H L
Sbjct: 627 KFTAVVIVFKKKSVIMILYNMLSQNVFHLVEMVVSSSWLGYEALSQVEYTHML 679


>07_03_0708 - 20865786-20867153
          Length = 455

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 359 KHLEALKKLANEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENG 496
           KH EA+++  +   F S   T   G+ +      SSV  QA LENG
Sbjct: 42  KHSEAVRRDGHRLAFLSYAATAAAGKATTTGTNSSSVNVQAQLENG 87


>06_03_0650 + 23157130-23157582,23157687-23157898,23157982-23158128,
            23158214-23158347,23158442-23158551,23158711-23158817,
            23159045-23159183,23159286-23159402,23159737-23159844,
            23159927-23159998,23160108-23160230,23160336-23160495,
            23160585-23160706,23160825-23160962,23161042-23161184,
            23161305-23161367,23161567-23161630,23161709-23161844,
            23162123-23162196,23162764-23162858,23162951-23162982,
            23163104-23163276
          Length = 973

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/112 (20%), Positives = 43/112 (38%)
 Frame = +2

Query: 290  RGSITLKSIRTGVPIIDQILFNEKHLEALKKLANEDEFYSIKTTITTGENSKGTEYLSSV 469
            R ++ L +I   +P++  I       +       ED   SI   + + +  + T+Y   V
Sbjct: 672  RNTVLLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLV 731

Query: 470  KAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKLNSKFY 625
             AQA  +  + D+   W  P    +     +       ++AT +  L   FY
Sbjct: 732  CAQAHRQELIQDLYKTWHDPQRGTV-TGGMIRELLISFRKATGQKPLRIIFY 782


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,214,733
Number of Sequences: 37544
Number of extensions: 252837
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)