Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F02
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40547| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   3e-09
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       30   1.8  
SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)                29   3.1  
SB_10488| Best HMM Match : aPHC (HMM E-Value=0.82)                     29   3.1  
SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_36633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)                 28   7.2  
SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_40547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = +2

Query: 635 IEQAPVPDTASYIQKMERDREAREKGEMKDNRSFLXKYWMYI 760
           I   P+PDT +Y+Q+ME+++  +  G+ KDNRSFL KYWMYI
Sbjct: 59  ISNGPLPDTQTYVQRMEKEKRDQAGGKGKDNRSFLAKYWMYI 100


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 356 EKHLEALKKLANEDEFYSIKTTITTGE 436
           ++HL A +KLA+ED+ Y    T+ T E
Sbjct: 659 QRHLRAAEKLADEDQSYRAAITVVTDE 685


>SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)
          Length = 322

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +2

Query: 47  VPFKFEIIYGCVFYLKIQLVIKFTNVVLIYLTKLIIMQQFTLLFVVHLTALFASTAGIDY 226
           VPFK  +       + I + IKFTN+       +II+   T + ++ +  +F    GI  
Sbjct: 229 VPFKRLVRRSYNIVITITITIKFTNI-----DTIIIVINITNIIIILINIIF--IRGIIV 281

Query: 227 DGFLNMKLEHSLNCNDE 277
           D +++ K  H  + NDE
Sbjct: 282 DIYIHCKHYHIHHFNDE 298


>SB_10488| Best HMM Match : aPHC (HMM E-Value=0.82)
          Length = 208

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 150 INLVKYINTTLVNLITSWIFK 88
           INL+ YI   L+ +IT WIFK
Sbjct: 43  INLLIYIGLLLLTIITQWIFK 63


>SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 203 ASTAGIDYDGFLNMKLEHSLNCNDE 277
           A T GI Y+G +N++  H LNC+ +
Sbjct: 324 AGTPGIVYNGQVNLRNAHCLNCSSD 348


>SB_36633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 458 LSSVKAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQ 589
           L+S +A  F+EN +SDV     +P   V  +NF       P  Q
Sbjct: 63  LASFQAHLFVENIVSDVAKTCGIPENEVRQLNFYSEGDLTPYNQ 106


>SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
          Length = 364

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +2

Query: 11  MIYRHRLIQLLIVPFKFEIIYGCVFYLKIQLVIKF---TNVVLIYLTKLIIMQQFTLLFV 181
           M+YR+R+++     F   +    + +  + L +     T++ + YL  +I+M   T +F 
Sbjct: 30  MVYRYRILRTFTNGFVVSLALSDILFGAVLLPVNINDQTSIYVGYLMSIILMANVTNMFA 89

Query: 182 VHLTALFA 205
           V L    A
Sbjct: 90  VTLDRYLA 97


>SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 542 IAVNFQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEMK 721
           IA N +   S +  K A  +    +  +LR +   P P T + I+ + +D E R+  E K
Sbjct: 299 IAGNSEQDTSIKKTKTAKPKQSEAASDFLRDLLALPTPGTRNLIKHLHKDEEERKPKEEK 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,537,171
Number of Sequences: 59808
Number of extensions: 324768
Number of successful extensions: 825
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)