Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F01
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   4.2  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    26   5.5  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    26   5.5  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   7.3  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   9.7  

>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 658 TISFHSLVKATRLYNYYKKIIKIMTILTATNKPQTNTVSKK*SKWKKITVIFAIK 494
           ++ FHS+ K T L+ ++   + + TI+  TNK           K KKI ++ +++
Sbjct: 210 SLLFHSIDKITSLFIHFFPPLVLHTIVHLTNKSYLKDRFPAVLKVKKIDLLSSVE 264


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 44  AGLMWILVDKLPRFLYKPLDP-NEVNYSIYSISAKDAI 154
           AG + +++D+ P F Y P  P  +V++ + + +   A+
Sbjct: 216 AGFLGMILDQRPHFFYSPATPTGKVHFDVSNTTELPAV 253


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 44  AGLMWILVDKLPRFLYKPLDP-NEVNYSIYSISAKDAI 154
           AG + +++D+ P F Y P  P  +V++ + + +   A+
Sbjct: 216 AGFLGMILDQRPHFFYSPATPTGKVHFDVSNTTELPAV 253


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 68  DKLPRFLYKPLDPNEVNYSIYSISAKDAIAGTACE 172
           D+L  FL K L P  +    YS+ +K +   + CE
Sbjct: 43  DQLSNFLCKILKPTNLTPQTYSLESKSSNLVSDCE 77


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 190 VCIQYLFACCSCNCIFCTNTVNAIVHFIGIEG 95
           V +QY+    + NCIFC    N  ++   IEG
Sbjct: 167 VALQYI---PTMNCIFCAQKKNIPINVCNIEG 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,280
Number of Sequences: 5004
Number of extensions: 49273
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)