Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F01
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    30   1.9  
12_01_0215 - 1634141-1634144,1634467-1634510,1635639-1635668,163...    28   5.7  
10_06_0042 - 10015657-10017840                                         28   7.6  

>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 246 SNPTHTLVICVFFRSVLKFG 305
           SN TH LV+  FFR+ +KFG
Sbjct: 197 SNMTHALVLLSFFRNTVKFG 216


>12_01_0215 -
           1634141-1634144,1634467-1634510,1635639-1635668,
           1635784-1635891,1635975-1636060,1636779-1636866,
           1638135-1638253,1638525-1638600,1638820-1638882,
           1639536-1639592,1640016-1640056,1640642-1640738,
           1641636-1641692
          Length = 289

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 336 PRTELIKPQMAVWSNLATKMKPT*NCKLPINYVQFLF 446
           P T L +P +++  N+A+ +K    CKLP+  V  +F
Sbjct: 240 PMTYLSRPWLSIVVNIASMLKNNFVCKLPVYMVVQVF 276


>10_06_0042 - 10015657-10017840
          Length = 727

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 204 IILISFVQFLFKTNSNPTHTLVICVFFRSVLKFG 305
           ++  + V F     SNP  T  + VF   V+K+G
Sbjct: 121 VVFAALVVFFSSVTSNPMVTATVLVFVAGVIKYG 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,638,927
Number of Sequences: 37544
Number of extensions: 258572
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)