Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_F01
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81037-8|CAI79129.1|  217|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z70034-14|CAC44294.1|  356|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z70034-13|CAC44293.1|  350|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z49910-11|CAC44292.1|  356|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z49910-10|CAC44291.1|  350|Caenorhabditis elegans Hypothetical p...    27   8.9  

>Z81037-8|CAI79129.1|  217|Caenorhabditis elegans Hypothetical
           protein C17E4.11 protein.
          Length = 217

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 453 YNQTKIEHS*LEVYNFKWVS---FLLLNCSKLPFEVL 352
           Y+Q  IE+  LE  N +W+S     L+NC    F+V+
Sbjct: 73  YSQVLIENGRLEYPNMEWISDDITTLINCESSSFDVV 109


>Z70034-14|CAC44294.1|  356|Caenorhabditis elegans Hypothetical
           protein C18E9.11b protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 41  AAGLMWILVDKLPRFLYKPLDPNEVNYSIYSISA 142
           +AG  W L D+L  +LY+     +VN++ +++ A
Sbjct: 38  SAGAFWGLKDRLKCYLYECCHEPDVNFNYHTLDA 71


>Z70034-13|CAC44293.1|  350|Caenorhabditis elegans Hypothetical
           protein C18E9.11a protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 41  AAGLMWILVDKLPRFLYKPLDPNEVNYSIYSISA 142
           +AG  W L D+L  +LY+     +VN++ +++ A
Sbjct: 32  SAGAFWGLKDRLKCYLYECCHEPDVNFNYHTLDA 65


>Z49910-11|CAC44292.1|  356|Caenorhabditis elegans Hypothetical
           protein C18E9.11b protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 41  AAGLMWILVDKLPRFLYKPLDPNEVNYSIYSISA 142
           +AG  W L D+L  +LY+     +VN++ +++ A
Sbjct: 38  SAGAFWGLKDRLKCYLYECCHEPDVNFNYHTLDA 71


>Z49910-10|CAC44291.1|  350|Caenorhabditis elegans Hypothetical
           protein C18E9.11a protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 41  AAGLMWILVDKLPRFLYKPLDPNEVNYSIYSISA 142
           +AG  W L D+L  +LY+     +VN++ +++ A
Sbjct: 32  SAGAFWGLKDRLKCYLYECCHEPDVNFNYHTLDA 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,302
Number of Sequences: 27780
Number of extensions: 273446
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)