Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E24
         (663 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          26   0.32 
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           26   0.32 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.42 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.42 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   1.7  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   2.2  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   5.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   5.2  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   5.2  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   5.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.2  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   5.2  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   5.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.8  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 374 DKTCTPKAFPAAMAGLSSPRSIATDA 297
           +K  TP++ PA  A   SP+S+A+ A
Sbjct: 149 NKVSTPRSSPAETASSLSPQSVASTA 174


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 374 DKTCTPKAFPAAMAGLSSPRSIATDA 297
           +K  TP++ PA  A   SP+S+A+ A
Sbjct: 140 NKVSTPRSSPAETASSLSPQSVASTA 165


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = -2

Query: 398 PTRRPP--VPDKTCTPKAFPAAMAGLSSPRSIATDALQNCSR-PNTGRY 261
           P ++ P   P  + TP + P      S+P   +   + +CS  P T  Y
Sbjct: 66  PWKKSPQGAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTASY 114


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 407 NSAPTRRPPVPDKTCTPKAFPAAMAGLSSPRSIATDALQNCSRPNT 270
           NSA +  PP  ++  +P   P  +   SSPRSI+ D L     PN+
Sbjct: 40  NSAASPAPP-EEEAASPT--PGDVPTPSSPRSISEDPLNCRDLPNS 82


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 425 LRCLLRNSAPTRRPPVPDKT 366
           +RC LR   P R+P  P  T
Sbjct: 105 VRCALRKHKPNRKPRTPFTT 124


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 513 PLLGREDQGHRLRRFHRRPQERSGECRHTAARMRPQSHRHXPHQ 644
           P+L     G R R+     +E S + +H + R  PQS     HQ
Sbjct: 55  PVLKSRSFG-RKRKSISSDEENSFQGKHKSRRKAPQSFEDIQHQ 97


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 311 CSLVRIVLPSPLEKLLVCKSCP 376
           C+L    LP    +L  C  CP
Sbjct: 489 CALTTRELPGETLRLFTCMECP 510


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 311 CSLVRIVLPSPLEKLLVCKSCP 376
           C+L    LP    +L  C  CP
Sbjct: 496 CALTTRELPGETLRLFTCMECP 517


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 409 GTLRRRADHQSRTRLA 362
           G LRRR+   SR+RLA
Sbjct: 173 GKLRRRSTAASRSRLA 188


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 142 EKYPQ*KVCLTKTPLSGGLVRHLGI 68
           EK  + K+CL +   SG L RH+ +
Sbjct: 103 EKPYECKLCLLRFSQSGNLNRHMRV 127


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 142 EKYPQ*KVCLTKTPLSGGLVRHLGI 68
           EK  + K+CL +   SG L RH+ +
Sbjct: 359 EKPYECKLCLLRFSQSGNLNRHMRV 383


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 355 FGVQVLSGTGGLRVGAEFLNKHLKYDTFYYS 447
           + +  L G   LR+G +   K  K D FY+S
Sbjct: 29  YAICKLIGLNTLRIGRKGELKQHKSDYFYFS 59


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 355 FGVQVLSGTGGLRVGAEFLNKHLKYDTFYYS 447
           + +  L G   LR+G +   K  K D FY+S
Sbjct: 29  YAICKLIGLNTLRIGRKGELKQHKSDYFYFS 59


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 390 QTTSPGQDLHTKSFSSGDGRTILTKEHSHRRIT 292
           +T  PG  +  K  +SG+    +T E   RR++
Sbjct: 423 ETVQPGNSVFLKCIASGNPTPEITWELYGRRLS 455



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 296  LQNCSRPNTGRYSC 255
            +++ SR N G YSC
Sbjct: 1363 IRDVSRNNAGEYSC 1376


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,416
Number of Sequences: 336
Number of extensions: 4081
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)