Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_E24
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 176 3e-45
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 169 3e-43
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 44 3e-05
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 31 0.20
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 27 1.8
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 27 2.4
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 4.2
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 4.2
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 4.2
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 4.2
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 25 7.4
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 25 9.7
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 176 bits (428), Expect = 3e-45
Identities = 83/201 (41%), Positives = 119/201 (59%), Gaps = 3/201 (1%)
Frame = +1
Query: 70 FQGVEQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADET 249
F +E+ +F LN + +D KVN+ VGAYRD+ GKPW+LP V+K K + +
Sbjct: 6 FANIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQAS 65
Query: 250 LLHEYLPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNK-HLK 426
HEYLP+ GL +F A+ +L + ++ + +Q +SGTG + A F+ ++K
Sbjct: 66 FNHEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVK 125
Query: 427 YD--TFYYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPENAVIL 600
+ Y S PTW H ++ G T +Y YWDAK R D++G + +KSAPE ++ L
Sbjct: 126 HTGAHVYISNPTWPVHRTLWEKLGVTVD-TYPYWDAKNRSFDYEGMLSTIKSAPEGSIFL 184
Query: 601 LHACAHNPTGIXPTREQWVKI 663
LHACAHNPTGI PTREQW+ I
Sbjct: 185 LHACAHNPTGIDPTREQWLSI 205
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 169 bits (411), Expect = 3e-43
Identities = 83/192 (43%), Positives = 114/192 (59%)
Frame = +1
Query: 79 VEQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADETLLH 258
V GPP +F + + +D K+NLG G YRD+ GKP+VLP VR+ E +L + + L
Sbjct: 43 VPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQK-LDK 101
Query: 259 EYLPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTF 438
EY P+ G+ F + + G+ +I + Q +SGTG L + A FL T
Sbjct: 102 EYAPITGIPSFRVQATKLAYGDVYESIK-DRLVSAQSISGTGALCIAANFLASFYPSKTI 160
Query: 439 YYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPENAVILLHACAH 618
Y S PTW NH VF +G T +SY+Y+D TRG+D G + DL SAP+ ++ILLHACAH
Sbjct: 161 YVSDPTWGNHKNVFSRAGLTV-KSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHACAH 219
Query: 619 NPTGIXPTREQW 654
NPTG+ PT+ QW
Sbjct: 220 NPTGVDPTKAQW 231
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 43.6 bits (98), Expect = 3e-05
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +1
Query: 196 WVLPIVRKMEKQLAADETLLHEYLPVLGLEQFCNASVAML-LGEDSPAIAAGKAFGVQVL 372
W +VR + K+L + L HEY P ++ S+A L L D+P I AG V ++
Sbjct: 106 WSQQVVRVLVKRLNISDLLYHEYKPKFEVDTLNATSLASLPLDIDAPCIRAGLEPEVALI 165
Query: 373 ---SGTGGLRVGAEFLNKHLKYDTFY-YSTPTWENH 468
SG+ G+ FL K KY Y Y TP + NH
Sbjct: 166 NHSSGSTGVPKSMPFLMK--KYALGYDYGTPEFMNH 199
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 293 VMRLWLCSLVRIVLPSPLEKLLVCKSCPGLVVCASAQSSSTSILNMIHSTTPRL 454
++ ++CS ++ LP+PL L C S V + S LN++ + P L
Sbjct: 393 ILSAFICSPPQLPLPNPLRMYLPCPSLNSTEVSVITLAPQHSFLNIVINLNPAL 446
>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 1.8
Identities = 8/26 (30%), Positives = 21/26 (80%)
Frame = +1
Query: 100 EVFLLNRLFTEDTFQNKVNLGVGAYR 177
E+ +++++ TED ++ +++G+G+YR
Sbjct: 136 EIIMVDQIKTEDLIESGLSIGMGSYR 161
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 55 QMASRFQGVEQGPPIEVFLLNRLFTEDTFQNKV 153
++ + F+ EQ PPI L R F TFQ++V
Sbjct: 828 EVQAEFEPNEQIPPISARLRRRAFEFSTFQDEV 860
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 314 SLVRIVLPSPLEK--LLVCKSCPGLVVCASAQSSSTSILNMIHST 442
S+++ VL P+ LL+CK C ++ C + + ++ ++ +
Sbjct: 958 SVLKRVLDGPMRTKFLLLCKRCKAVLCCRVSPAQKADVVQLVRES 1002
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +2
Query: 218 RWKNSWQQMKPYCMNTFLC*V--W-SSFVMRLWLCSLVRIVLP---SPLEK 352
RW W + KP C+ T L + W S F+ + SL+R++ +P+EK
Sbjct: 245 RWPTIWGEDKPRCLYTSLYHIFKWCSDFISKPPTKSLIRLLAEHTLNPVEK 295
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 597 YDGILRSALEVFDETVEVYAP 535
YDGI R ++FD++ +Y P
Sbjct: 106 YDGIQRPLKQIFDKSQSIYIP 126
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 350 KLLVCKSCPGLVVCASAQSSSTSILNMIHSTT 445
++LVC++ GL C ++ S + M+ STT
Sbjct: 890 QVLVCENLVGLFSCVFVKNKLQSKIRMLQSTT 921
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -3
Query: 346 QRRWQDYPHQGA*PQTHYKTAPDLTQEGI-HAV 251
++ W++YPH Y D T+E I H V
Sbjct: 114 EKHWEEYPHYAGYDYKDYVRLLDATKEAIAHGV 146
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 626 VGLWAHACSSMTAFSGALLRSSMKPSKSMP 537
VG WA+ S++++ SG+ RSS+ S P
Sbjct: 87 VGRWANRHSNVSSSSGSRGRSSVSSRDSSP 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,192
Number of Sequences: 5004
Number of extensions: 68544
Number of successful extensions: 227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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