Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_E24
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 208 4e-54
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 163 8e-41
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 106 1e-23
03_02_0699 + 10513013-10513092,10513518-10513599,10513710-105138... 30 1.4
12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551... 30 1.9
06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119 29 2.5
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 29 4.4
05_05_0392 + 24629528-24630442 28 5.8
06_03_0644 - 23107179-23107607,23107661-23107843 28 7.6
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 208 bits (507), Expect = 4e-54
Identities = 101/201 (50%), Positives = 127/201 (63%)
Frame = +1
Query: 61 ASRFQGVEQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAA 240
+S F G+ Q P + + + +D KVNLGVGAYR E GKP VL +VR+ E+ L
Sbjct: 4 SSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLIN 63
Query: 241 DETLLHEYLPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKH 420
+ + + EYLP+ GL F S ++ G DSPAI + VQ LSGTG LRVG EFL +H
Sbjct: 64 NPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARH 123
Query: 421 LKYDTFYYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPENAVIL 600
T Y PTW NH VF +G T RSYRY+D TRG+DF G +EDL SAP A++L
Sbjct: 124 YHERTIYIPQPTWGNHPKVFTLAGLT-VRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVL 182
Query: 601 LHACAHNPTGIXPTREQWVKI 663
LHACAHNPTG+ PT +QW +I
Sbjct: 183 LHACAHNPTGVDPTLDQWEQI 203
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 163 bits (397), Expect = 8e-41
Identities = 81/204 (39%), Positives = 123/204 (60%)
Frame = +1
Query: 52 KQMASRFQGVEQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQ 231
+ MAS F VE + + F D +KVN+GVGAYRD++GKP VL VR+ E++
Sbjct: 27 RSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERR 86
Query: 232 LAADETLLHEYLPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFL 411
+A + EYLP+ G + S+ + GE+ I + VQ LSGTG R+ A+F
Sbjct: 87 IAGSMNM--EYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQ 144
Query: 412 NKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPENA 591
+ L Y TPTW NHH ++ ++ + +++ Y+ ++RG+DF G ++D+K+AP+ +
Sbjct: 145 KRFLPDSQIYIPTPTWANHHNIWRDAQVPQ-KTFTYYHPESRGLDFAGLMDDIKNAPDGS 203
Query: 592 VILLHACAHNPTGIXPTREQWVKI 663
LLHACAHNPTG+ P+ EQW +I
Sbjct: 204 FFLLHACAHNPTGVDPSEEQWREI 227
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 106 bits (255), Expect = 1e-23
Identities = 45/98 (45%), Positives = 66/98 (67%)
Frame = +1
Query: 370 LSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDF 549
LSGTG R+ A+F + L Y TPTW NHH ++ ++ + R++ Y+ ++RG+DF
Sbjct: 68 LSGTGACRLFADFQRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQ-RTFTYYHPESRGLDF 126
Query: 550 DGFIEDLKSAPENAVILLHACAHNPTGIXPTREQWVKI 663
G ++D+K+AP + LLHACAHNPTG+ PT EQW +I
Sbjct: 127 AGLMDDIKNAPNGSFFLLHACAHNPTGVDPTEEQWREI 164
>03_02_0699 +
10513013-10513092,10513518-10513599,10513710-10513826,
10514125-10514187,10514595-10514699,10514777-10514827,
10515002-10515322,10515423-10515629,10515708-10516001
Length = 439
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 550 DGFIEDLKSAPENAVILLHACAHNPTGIXPTREQWVKI 663
+GF DL S P +I +NPTG +R+Q K+
Sbjct: 200 NGFFPDLSSVPRTDIIFF-CSPNNPTGAAASRDQLTKL 236
>12_02_1110 +
26154024-26154314,26154400-26154944,26155023-26155109,
26155237-26155293,26155369-26155607,26155715-26155833,
26155945-26156031,26156117-26156194
Length = 500
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 338 MAGLSSPRSIATDALQNCSRPNTGRYSCSKVSSAASCFSILRT-MGSTHGLPFSSLY 171
M GLS SI PN R+S V +A+ FSIL T + P S+LY
Sbjct: 319 MLGLSYAASIRVGNELGAGHPNVARFSVFVVITASVAFSILATILVLVLRYPLSTLY 375
>06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119
Length = 393
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 361 VQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVN 486
VQ L +GG+++GA LN + + F+ T T + VF+N
Sbjct: 353 VQALEASGGVKIGAG-LNVAYQREVFFIRTSTSNQIYAVFLN 393
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +1
Query: 295 NASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFL--NKHL--KYDTFY----YST 450
+ + A+ GE P +A G G + +G + +G + +++ +YD F+ YS+
Sbjct: 2 SGAAAIATGEGGPLVAVGLGGGNDLHNGDAAVVLGKTWCWASRYPGDQYDRFWWQLGYSS 61
Query: 451 PTWEN 465
PTW+N
Sbjct: 62 PTWKN 66
>05_05_0392 + 24629528-24630442
Length = 304
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 404 SAPTRRPPVPDKTCTPKAFPAAMAGLSSPRSIAT 303
S P R+PPVP + C +A P +SP S T
Sbjct: 217 SGPQRKPPVPPRPC-GRASPRRAQETNSPASSTT 249
>06_03_0644 - 23107179-23107607,23107661-23107843
Length = 203
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 335 AGLSSPRSIATDALQNCSRPNTGRYSCSKVSSAAS 231
AG+++ + AT C RP TG C + + A+
Sbjct: 158 AGMAAGKDAATGVRTRCRRPETGDDGCERTAVVAA 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,919,417
Number of Sequences: 37544
Number of extensions: 481902
Number of successful extensions: 1692
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1688
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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