Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_E24
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical pr... 229 1e-60
AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical... 192 2e-49
U39645-9|AAM51511.1| 297|Caenorhabditis elegans Hypothetical pr... 189 1e-48
U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical pr... 189 1e-48
U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical pr... 124 7e-29
U46671-1|AAA85747.1| 364|Caenorhabditis elegans Hypothetical pr... 69 4e-12
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 31 0.73
AL033514-34|CAA22113.1| 463|Caenorhabditis elegans Hypothetical... 30 1.3
AL033514-33|CAB54500.1| 480|Caenorhabditis elegans Hypothetical... 30 1.3
AF160493-1|AAD43348.1| 465|Caenorhabditis elegans DNA-binding p... 30 1.3
AF160492-1|AAD43347.1| 463|Caenorhabditis elegans DNA-binding p... 30 1.3
U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 3.9
Z99281-35|CAB16518.2| 524|Caenorhabditis elegans Hypothetical p... 28 5.1
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 28 5.1
U88308-2|AAM15557.1| 313|Caenorhabditis elegans Hypothetical pr... 28 5.1
U88308-1|AAB42324.2| 461|Caenorhabditis elegans Hypothetical pr... 28 5.1
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 5.1
U40412-1|AAA81395.1| 570|Caenorhabditis elegans Temporarily ass... 28 5.1
Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical p... 28 6.8
Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical p... 28 6.8
AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein. 28 6.8
AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein. 28 6.8
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 27 9.0
U53155-3|AAC48267.3| 492|Caenorhabditis elegans Hypothetical pr... 27 9.0
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 27 9.0
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 27 9.0
AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenase... 27 9.0
>U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical
protein T01C8.5 protein.
Length = 408
Score = 229 bits (560), Expect = 1e-60
Identities = 104/197 (52%), Positives = 134/197 (68%)
Frame = +1
Query: 64 SRFQGVEQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAAD 243
S F G+ PPIEVF N+++ ++T KVNL +GAYR E G+PWVLP+V + E ++A D
Sbjct: 2 SFFDGIPVAPPIEVFHKNKMYLDETAPVKVNLTIGAYRTEEGQPWVLPVVHETEVEIAND 61
Query: 244 ETLLHEYLPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHL 423
+L HEYLPVLG E F A+ ++LG +SPAI ++FGVQ LSGTG LR GAEFL
Sbjct: 62 TSLNHEYLPVLGHEGFRKAATELVLGAESPAIKEERSFGVQCLSGTGALRAGAEFLASVC 121
Query: 424 KYDTFYYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPENAVILL 603
T Y S PTW NH LVF +GFT Y +WD + + + F+ DL+SAPE +VI+L
Sbjct: 122 NMKTVYVSNPTWGNHKLVFKKAGFTTVADYTFWDYDNKRVHIEKFLSDLESAPEKSVIIL 181
Query: 604 HACAHNPTGIXPTREQW 654
H CAHNPTG+ PT+EQW
Sbjct: 182 HGCAHNPTGMDPTQEQW 198
>AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical
protein C44E4.3 protein.
Length = 419
Score = 192 bits (467), Expect = 2e-49
Identities = 89/198 (44%), Positives = 126/198 (63%)
Frame = +1
Query: 70 FQGVEQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADET 249
F+ V P + + F +DT NK+NLGVGAYRD+ GKP+VL VR+ E+Q+ D
Sbjct: 23 FRNVPLAPADPILGVTEAFKKDTNPNKINLGVGAYRDDQGKPFVLRAVREAEQQII-DAK 81
Query: 250 LLHEYLPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKY 429
+ EY + G+ +F + + G++S I G+ F Q +SGTG LR+G +F+ K +
Sbjct: 82 MDKEYSTITGVPEFAPLAAKLAFGDNSEVIRDGRVFTTQSISGTGALRIGGQFVEKFIPS 141
Query: 430 DTFYYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPENAVILLHA 609
T +Y TPTW NH VF NSG + + YRY++ +T G D +G +ED+ PE +VILLHA
Sbjct: 142 KTLFYPTPTWANHLPVFRNSGLSI-QPYRYYNQETLGFDVEGALEDISKMPEGSVILLHA 200
Query: 610 CAHNPTGIXPTREQWVKI 663
CAHNPTG+ PT+EQW K+
Sbjct: 201 CAHNPTGVDPTKEQWKKL 218
>U39645-9|AAM51511.1| 297|Caenorhabditis elegans Hypothetical
protein C14F11.1b protein.
Length = 297
Score = 189 bits (461), Expect = 1e-48
Identities = 91/195 (46%), Positives = 122/195 (62%)
Frame = +1
Query: 79 VEQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADETLLH 258
VE GPP + + F D+ K+NLGVGAYRD+ GKP+VLP V++ E+Q+ A L
Sbjct: 21 VEMGPPDAILGVTEAFKADSNPKKINLGVGAYRDDQGKPFVLPSVKEAERQVIA-ANLDK 79
Query: 259 EYLPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTF 438
EY ++GL +F S + LGE+S I + F Q +SGTG LR+G+EFL+K+ K
Sbjct: 80 EYAGIVGLPEFTKLSAQLALGENSDVIKNKRIFTTQSISGTGALRIGSEFLSKYAKTKVI 139
Query: 439 YYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPENAVILLHACAH 618
Y TPTW NH +F +G + YRY+D T G D G + D+ PE + ILLHACAH
Sbjct: 140 YQPTPTWGNHVPIFKFAG-VDVKQYRYYDKSTCGFDETGALADIAQIPEGSTILLHACAH 198
Query: 619 NPTGIXPTREQWVKI 663
NPTG+ P+R+QW KI
Sbjct: 199 NPTGVDPSRDQWKKI 213
>U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical
protein C14F11.1a protein.
Length = 414
Score = 189 bits (461), Expect = 1e-48
Identities = 91/195 (46%), Positives = 122/195 (62%)
Frame = +1
Query: 79 VEQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADETLLH 258
VE GPP + + F D+ K+NLGVGAYRD+ GKP+VLP V++ E+Q+ A L
Sbjct: 21 VEMGPPDAILGVTEAFKADSNPKKINLGVGAYRDDQGKPFVLPSVKEAERQVIA-ANLDK 79
Query: 259 EYLPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTF 438
EY ++GL +F S + LGE+S I + F Q +SGTG LR+G+EFL+K+ K
Sbjct: 80 EYAGIVGLPEFTKLSAQLALGENSDVIKNKRIFTTQSISGTGALRIGSEFLSKYAKTKVI 139
Query: 439 YYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPENAVILLHACAH 618
Y TPTW NH +F +G + YRY+D T G D G + D+ PE + ILLHACAH
Sbjct: 140 YQPTPTWGNHVPIFKFAG-VDVKQYRYYDKSTCGFDETGALADIAQIPEGSTILLHACAH 198
Query: 619 NPTGIXPTREQWVKI 663
NPTG+ P+R+QW KI
Sbjct: 199 NPTGVDPSRDQWKKI 213
>U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical
protein T01C8.4 protein.
Length = 357
Score = 124 bits (298), Expect = 7e-29
Identities = 59/130 (45%), Positives = 83/130 (63%)
Frame = +1
Query: 64 SRFQGVEQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAAD 243
S F G+ PI+ + LF ++ K+NL + AYR E+G+PWVLP+VR++E + +
Sbjct: 4 SFFDGIHVASPIKELHTSELFQKEICPVKINLAIEAYRTEDGEPWVLPVVREIELKFPHE 63
Query: 244 ETLLHEYLPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHL 423
HEYLP+LG + FC ++ A+LLG DS AI G++F VQ +SGTG + VGAEFL + L
Sbjct: 64 PHHNHEYLPILGHDGFCKSATALLLGNDSLAIKEGRSFSVQCISGTGAICVGAEFLAQVL 123
Query: 424 KYDTFYYSTP 453
T Y S P
Sbjct: 124 SMKTIYVSNP 133
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +1
Query: 616 HNPTGIXPTREQWVKI 663
+NPTG+ PTREQW+++
Sbjct: 138 YNPTGMDPTREQWIQM 153
>U46671-1|AAA85747.1| 364|Caenorhabditis elegans Hypothetical
protein C14E2.2 protein.
Length = 364
Score = 68.5 bits (160), Expect = 4e-12
Identities = 27/68 (39%), Positives = 44/68 (64%)
Frame = +1
Query: 460 ENHHLVFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPENAVILLHACAHNPTGIXP 639
E+HHL+ +GFT Y +W+ + + +D + + DL+ AP +VI+L ACA+NPTG+
Sbjct: 90 ESHHLICKKAGFTTVAEYTFWNYEEKCVDIEKLLSDLEFAPAKSVIILPACAYNPTGMDL 149
Query: 640 TREQWVKI 663
+ QW +I
Sbjct: 150 SENQWKQI 157
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 630 ACGIVGACVQQYDGILRSALEVFDETVEVYAP 535
ACG G CV D +L + +FDE+ ++ AP
Sbjct: 1013 ACGEQGKCVDYTDYVLPAGASIFDESQDMPAP 1044
>AL033514-34|CAA22113.1| 463|Caenorhabditis elegans Hypothetical
protein Y75B8A.35b protein.
Length = 463
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 590 PSYCCTHAPTIPQAXTPPGNS 652
PSYCCT P P A TP GN+
Sbjct: 192 PSYCCTSGPISP-AYTPIGNN 211
>AL033514-33|CAB54500.1| 480|Caenorhabditis elegans Hypothetical
protein Y75B8A.35a protein.
Length = 480
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 590 PSYCCTHAPTIPQAXTPPGNS 652
PSYCCT P P A TP GN+
Sbjct: 209 PSYCCTSGPISP-AYTPIGNN 228
>AF160493-1|AAD43348.1| 465|Caenorhabditis elegans DNA-binding
protein ZIP-1 protein.
Length = 465
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 590 PSYCCTHAPTIPQAXTPPGNS 652
PSYCCT P P A TP GN+
Sbjct: 209 PSYCCTSGPISP-AYTPIGNN 228
>AF160492-1|AAD43347.1| 463|Caenorhabditis elegans DNA-binding
protein ZIP-1 protein.
Length = 463
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 590 PSYCCTHAPTIPQAXTPPGNS 652
PSYCCT P P A TP GN+
Sbjct: 192 PSYCCTSGPISP-AYTPIGNN 211
>U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical
protein F28B4.2 protein.
Length = 860
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +1
Query: 106 FLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADET---LLHEYLPVL 276
F L R+ +D QN + ENG + R +EK L D+ LL + LP
Sbjct: 733 FYLARVGLDDDLQNTDGANYKCIKIENGDRMPQLVARALEKHLIEDDKNTYLLVQLLPRG 792
Query: 277 G---LEQFCNASVAMLLGEDSPAI 339
G L CN AM SP +
Sbjct: 793 GEFVLPDNCNPFYAMAPDPTSPML 816
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = -2
Query: 386 PPVPDKTCTPKAFPAAMAGLSSPRSIATDA-LQNCSRPNTGRYSCSKVSSAASC 228
PP P +TC P PAA P A +A Q C GR C C
Sbjct: 125 PPNPPRTCCPPPTPAAPPPPPPPPPPAPEAPTQCCGSQPYGRTPCRSGCPNGDC 178
>Z99281-35|CAB16518.2| 524|Caenorhabditis elegans Hypothetical
protein Y57G11C.17 protein.
Length = 524
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 212 FVRWKNSWQQMKPYCMNTFLC*VWSSFVMRLWLCSLVRIVL 334
F++ +WQ+ C N+ C +W F + W + ++L
Sbjct: 232 FIQQFETWQKTTEICWNSVKCALWFGFRLVFWF-GFIELIL 271
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 398 PTRRPPVPDKTCTPKAFPAAMAGLSSPRSIATDALQNCSRPNTGR 264
P+ RP T T PA A S+PR++ + A SRP T R
Sbjct: 241 PSARPATTTGTATRPTRPAVPAA-SAPRALTSRAPAGPSRPTTTR 284
>Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical
protein F32A7.5b protein.
Length = 764
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 398 PTRRPPVPDKTCTPKAFPAAMAGLSSPRSIATDALQNCSRPNTGR 264
P+ RP T T PA A S+PR++ + A SRP T R
Sbjct: 241 PSARPATTTGTATRPTRPAVPAA-SAPRALTSRAPAGPSRPTTTR 284
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 398 PTRRPPVPDKTCTPKAFPAAMAGLSSPRSIATDALQNCSRPNTGR 264
P+ RP T T PA A S+PR++ + A SRP T R
Sbjct: 241 PSARPATTTGTATRPTRPAVPAA-SAPRALTSRAPAGPSRPTTTR 284
>U88308-2|AAM15557.1| 313|Caenorhabditis elegans Hypothetical
protein C32E8.6b protein.
Length = 313
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 140 KVSSVKSLFNKNTSIGGPCSTPWNREAICFFTKFYTG 30
+V+ + LF N + STP N+ I FF+ TG
Sbjct: 121 EVNLISELFTSNVTPSSTASTPENQGVIVFFSSGTTG 157
>U88308-1|AAB42324.2| 461|Caenorhabditis elegans Hypothetical
protein C32E8.6a protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 140 KVSSVKSLFNKNTSIGGPCSTPWNREAICFFTKFYTG 30
+V+ + LF N + STP N+ I FF+ TG
Sbjct: 121 EVNLISELFTSNVTPSSTASTPENQGVIVFFSSGTTG 157
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.3 bits (60), Expect = 5.1
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Frame = -2
Query: 407 NSAPTRR--PPVPDKTCTPKAFPAAMAGLS-SPRSIATDALQNCSRPNTGRYSCSKVSSA 237
NS PT P P T + ++ S ++T L P + S SS
Sbjct: 414 NSTPTTTITPGAPSSTLGSSSSTIVSTTITPSTPKVSTLTLSQSPTPTSTPLVVSSSSSG 473
Query: 236 ASCFSILRTMG-STHGLPFSSLYAPTPKLTLF*KVSSVKSLFNKNTSIGGPCST 78
+S + T+ ST G+P S+ PTP + ++ KS + S G ST
Sbjct: 474 SSSTVVTSTITPSTQGVPTSTSNQPTPSTS---NPTTPKSTVTASPSTTGATST 524
>U40412-1|AAA81395.1| 570|Caenorhabditis elegans Temporarily
assigned gene nameprotein 257 protein.
Length = 570
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 386 PPVPDKTCTPKAFPAAMAGLSSPRSIATDALQNCSRPNTGRYS 258
PP P T +P+A P A +S P TD+ QN S + G +S
Sbjct: 409 PPRPPTTASPRAAPVATFKVSWP----TDSSQNDSANDWGDFS 447
>Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical
protein ZK637.7b protein.
Length = 644
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 414 VEELCADAQTTSPGQDLHTKSFSSGDGRTILTKEHSHRRI 295
+ EL ADA+ + D ++K+F +TI+ EH ++ I
Sbjct: 472 LNELNADAEIQNMTSDKYSKAFQEKYAKTIIDLEHVNQNI 511
>Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical
protein ZK637.7a protein.
Length = 642
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 414 VEELCADAQTTSPGQDLHTKSFSSGDGRTILTKEHSHRRI 295
+ EL ADA+ + D ++K+F +TI+ EH ++ I
Sbjct: 470 LNELNADAEIQNMTSDKYSKAFQEKYAKTIIDLEHVNQNI 509
>AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein.
Length = 642
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 414 VEELCADAQTTSPGQDLHTKSFSSGDGRTILTKEHSHRRI 295
+ EL ADA+ + D ++K+F +TI+ EH ++ I
Sbjct: 470 LNELNADAEIQNMTSDKYSKAFQEKYAKTIIDLEHVNQNI 509
>AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein.
Length = 644
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 414 VEELCADAQTTSPGQDLHTKSFSSGDGRTILTKEHSHRRI 295
+ EL ADA+ + D ++K+F +TI+ EH ++ I
Sbjct: 472 LNELNADAEIQNMTSDKYSKAFQEKYAKTIIDLEHVNQNI 511
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 380 VPDKTCTPKAFPAAMAGLSSPRSIATDALQNC 285
V ++CTP F +GL P S D Q+C
Sbjct: 1265 VTAESCTPDQFKCVSSGLCIPASWKCDGQQDC 1296
>U53155-3|AAC48267.3| 492|Caenorhabditis elegans Hypothetical
protein ZC513.5 protein.
Length = 492
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 385 GLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRSYRY 519
G+R+ A L + D++++ P W ++F N + RS+ Y
Sbjct: 208 GVRIAAMCLAVSIPIDSYFWGRPLWPEGEVMFFN--VVENRSHEY 250
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = -2
Query: 392 RRPPVPDKTCTPKAFPAAMAGLSSPRSIATDALQNCS 282
R P D+ C P PA + + P A + +CS
Sbjct: 102 RSGPSCDQQCMPLCLPACINAIQGPTECAPQCMPSCS 138
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 380 VPDKTCTPKAFPAAMAGLSSPRSIATDALQNC 285
V ++CTP F +GL P S D Q+C
Sbjct: 1265 VTAESCTPDQFKCVSSGLCIPASWKCDGQQDC 1296
>AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenases,
short chain protein9 protein.
Length = 319
Score = 27.5 bits (58), Expect = 9.0
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Frame = +1
Query: 172 YRDENGKPWVLPIVRKMEKQLAADETLLHEYLPVLGLE---QFCNASVAMLLGEDSPAIA 342
++DENGKP P ++ E A ET+ + V+ L + + + +L+ ED
Sbjct: 213 FKDENGKP--RPEIKNAEV-FANGETVEYPGRAVVSLASDPRRMDKTGRILITED----- 264
Query: 343 AGKAFGVQVLSGTGGLRV-GAEFLNKHLKYDTFYYSTPTW 459
GK +G + G + F+ KHL ++T PTW
Sbjct: 265 LGKEYGFVDIDGLRPPNLRSVSFILKHLGWNTTANFVPTW 304
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,187,683
Number of Sequences: 27780
Number of extensions: 396996
Number of successful extensions: 1202
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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