Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E22
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.48 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.8  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   7.8  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   7.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -2

Query: 293 YFIHFHTCWVPVVSKPYNILFLVTVHVFYRSVFKKLCLLRLTSDFRVV*SR-RCLFCYFI 117
           Y++H   C   ++   + +LFL+ ++ FY ++   LC+      F +  +   C F  + 
Sbjct: 262 YYMHLLFCCAFIIFTMH-LLFLLCIYYFYCALIILLCIYYFCRAFIIFPTHFYCAFSLYP 320

Query: 116 TKRMF 102
            K  F
Sbjct: 321 LKSTF 325


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 681 FLYKNKNYTYYII 719
           FLY  ++YTY ++
Sbjct: 415 FLYNGRSYTYQVL 427


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory
          receptor candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 24 NLLIE*SYRNTYILLNNY 77
          N LI  +  NTY++LN Y
Sbjct: 18 NYLILSNKNNTYLVLNKY 35


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 515 CVQRGKKRTRSCCLTERL 568
           C+ RGK R  +  LTE+L
Sbjct: 167 CIFRGKYRNINLLLTEQL 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,548
Number of Sequences: 336
Number of extensions: 3708
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)