Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E22
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...   214   9e-57
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    28   1.6  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     27   2.1  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   3.6  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.6  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    26   6.4  

>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score =  214 bits (523), Expect = 9e-57
 Identities = 97/130 (74%), Positives = 110/130 (84%)
 Frame = +3

Query: 198 HTSIENVNSDEKQNVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKM 377
           H     ++  E+  VIRFG D D  C+K DEVLY IAEKV N AVIYLVDI EVPDFNKM
Sbjct: 13  HVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYLVDIDEVPDFNKM 72

Query: 378 YELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVS 557
           YELYD  T+MFF+RNKH+MIDLGTGNNNKINWPLEDKQEMIDIIET++RGARKG+GLV+S
Sbjct: 73  YELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIFRGARKGKGLVIS 132

Query: 558 PKDYSTKYRY 587
           PKDYST++RY
Sbjct: 133 PKDYSTRHRY 142


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 216 VNSDEKQNVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE--VPDFNKMYELY 389
           V  D+K  ++ F  DW   C ++     ++ +  KN   + +V I      D  +++E+ 
Sbjct: 154 VMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVA 213

Query: 390 DPCTVMFF 413
              T+ FF
Sbjct: 214 SFPTIKFF 221


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/66 (21%), Positives = 30/66 (45%)
 Frame = -3

Query: 397 HGSYNSYILLKSGTSVMSTKYMTAKFFTFSAMLYNTSSIFIHVGSQSCPNLITFCFSSLF 218
           HG+Y+SY  ++ GTS++  +          ++ Y  S + I   + +    I   F + F
Sbjct: 6   HGNYHSYYSMRGGTSIIDPRLKCLP----DSLFYEASVLDIGCNNGTVSAQIASIFGASF 61

Query: 217 TFSIEV 200
              +++
Sbjct: 62  VLGLDI 67


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +3

Query: 258 DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI-M 434
           DW+   +K ++  Y I   +      +  DI   P+  + Y   +   V  F     I +
Sbjct: 366 DWNEN-VKKNDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTIDL 424

Query: 435 IDLGTGNNNKINWPLEDKQEMIDII 509
           +D G    N   WPL   Q  +D++
Sbjct: 425 VDGGEDRENIPLWPLLHPQRFVDVV 449


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +3

Query: 258 DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI-M 434
           DW+   +K ++  Y I   +      +  DI   P+  + Y   +   V  F     I +
Sbjct: 366 DWNEN-VKKNDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTIDL 424

Query: 435 IDLGTGNNNKINWPLEDKQEMIDII 509
           +D G    N   WPL   Q  +D++
Sbjct: 425 VDGGEDRENIPLWPLLHPQRFVDVV 449


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/83 (21%), Positives = 33/83 (39%)
 Frame = -3

Query: 439 SIIMCLLRKKNITVHGSYNSYILLKSGTSVMSTKYMTAKFFTFSAMLYNTSSIFIHVGSQ 260
           S+I  L+    +T     N  I L    +     +  A    F  +    +++F+ + S 
Sbjct: 391 SLIASLMTTTPLTTFAQNNGVISLTKCAN-RRAGFFCAVILFFMGLFAKFAAVFVAIPSP 449

Query: 259 SCPNLITFCFSSLFTFSIEVCSK 191
               + TF FSS+    I + S+
Sbjct: 450 VLGGMTTFLFSSVAVSGIAIISQ 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,921
Number of Sequences: 5004
Number of extensions: 59787
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)