Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E22
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836    205   2e-53
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553...   198   4e-51
11_03_0156 - 10878941-10879040,10879993-10880150,10880738-10880872     55   7e-08
06_03_0752 - 24171847-24174321                                         31   0.71 
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877...    31   1.2  
08_02_1625 + 28336168-28336409,28336491-28336564,28337162-283372...    30   2.2  
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490...    29   5.0  

>10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836
          Length = 168

 Score =  205 bits (501), Expect = 2e-53
 Identities = 101/147 (68%), Positives = 112/147 (76%), Gaps = 26/147 (17%)
 Frame = +3

Query: 225 DEKQNVIRFGHDWDPTCMK--------------------------MDEVLYSIAEKVKNF 326
           +E+  +IRFGHDWD TCM+                          MDEVL ++AE +KNF
Sbjct: 22  EERLVIIRFGHDWDETCMQICCGDDLDSFARFRILWRELSVYLTTMDEVLAAVAETIKNF 81

Query: 327 AVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDI 506
           AVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINW L+DKQE IDI
Sbjct: 82  AVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI 141

Query: 507 IETVYRGARKGRGLVVSPKDYSTKYRY 587
           +ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct: 142 VETVYRGARKGRGLVIAPKDYSTKYRY 168


>07_01_0725 -
           5532803-5533324,5533631-5533657,5534285-5534398,
           5534564-5534731,5535951-5536193,5537178-5537261,
           5537357-5538117,5539637-5539730,5540633-5540899,
           5541311-5541316,5542538-5542657
          Length = 801

 Score =  198 bits (483), Expect = 4e-51
 Identities = 90/110 (81%), Positives = 99/110 (90%), Gaps = 2/110 (1%)
 Frame = +3

Query: 225 DEKQNVIRFGHDWDPTCMK--MDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPC 398
           +E+  +IRFGHDWD TCM+  MDEVL ++AE +KNFAVIYLVDITEVPDFN MYELYDP 
Sbjct: 22  EERLVIIRFGHDWDETCMQGMMDEVLAAVAETIKNFAVIYLVDITEVPDFNTMYELYDPS 81

Query: 399 TVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGL 548
           TVMFFFRNKHIMIDLGTGNNNKINW L+DKQE IDI+ETVYRGARKGRGL
Sbjct: 82  TVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGL 131


>11_03_0156 - 10878941-10879040,10879993-10880150,10880738-10880872
          Length = 130

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
 Frame = +3

Query: 228 EKQNVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDI--TEVPDFNKMYELYDPCT 401
           +K  V+RFG   D  C+ +D++L   +  +  FA + LVD+   E+  +   +++     
Sbjct: 24  DKVLVLRFGRADDAACLHLDDILAKSSWDISRFATVALVDMDSEEMQVYIDYFDITLVPA 83

Query: 402 VMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIE 512
            +FFF  +H+ +D GT ++ K       KQ+ ID++E
Sbjct: 84  TIFFFNAQHMKMDSGTPDHTKWIGSFSSKQDFIDVVE 120


>06_03_0752 - 24171847-24174321
          Length = 824

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +3

Query: 360 PDFNKMY--ELYDPCTVMFF--FRNKHIMIDLGTGNN 458
           P +N+ Y  E++DPCTV+    F N H+    G GNN
Sbjct: 450 PTWNEQYTWEVFDPCTVITIGVFDNNHLGNGNGNGNN 486


>07_03_0391 -
           17587144-17587323,17587460-17587566,17587664-17587742,
           17587850-17587939,17588337-17588588,17588748-17588894,
           17589071-17589246,17589303-17589394,17589582-17589673
          Length = 404

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 461 IVVASPQVNHYVFVAEEEHHCAW 393
           +V   P+VN ++F  EE HH  W
Sbjct: 46  VVSLDPEVNRFIFQQEEPHHVQW 68


>08_02_1625 +
           28336168-28336409,28336491-28336564,28337162-28337236,
           28337433-28337459,28339261-28339634,28339746-28340492
          Length = 512

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 459 CCCQSPSQSLCVCCGRRTSLCMDRIIHTFY*NLEP 355
           CC Q P   + +C    T LC DR ++ F+ N  P
Sbjct: 439 CCGQGPYNGVGLCTALST-LCPDRSLYVFWDNFHP 472


>01_05_0104 +
           18148396-18148642,18148797-18148886,18148972-18149072,
           18149174-18149287,18149381-18149462,18149592-18149659,
           18149747-18149806,18149885-18150009,18150663-18150861,
           18150942-18151073,18151152-18151244,18151360-18152244,
           18152339-18152664,18153003-18153341,18153911-18153996,
           18154054-18154139
          Length = 1010

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 377 HFIKIWNLCNVN*IYDSKIFYFFR 306
           H I++W+LC+V+ I+ ++ +  FR
Sbjct: 774 HIIQLWDLCHVSIIHRTQFYLLFR 797


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,744,808
Number of Sequences: 37544
Number of extensions: 320115
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)